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2020

2D Assignment and quantitative analysis of cellulose and oxidized celluloses using solution-state NMR spectroscopy

Koso, T., Rico del Cerro, D., Heikkinen, S., Nypelö, T., Buffiere, J., Perea-Buceta, J. E., Potthast, A., Rosenau, T., Heikkinen, H., Maaheimo, H., Isogai, A., Kilpeläinen, I. & King, A. W. T., 1 Sep 2020, In : Cellulose. 27, 14, p. 7929-7953 25 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

An investigation on changes in composition and antioxidant potential of mature and immature summer truffle (Tuber aestivum)

Shah, N., Usvalampi, A., Chaudhary, S., Seppänen-Laakso, T., Marathe, S., Bankar, S., Singhal, R. & Shamekh, S., 1 Apr 2020, In : European Food Research and Technology. 246, p. 723-731 9 p.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Characterizing the Quality of Insight by Interactions: A Case Study

He, C., Micallef, L., He, L., Peddinti, G., Aittokallio, T. & Jacucci, G., 2 Mar 2020, (Accepted/In press) In : IEEE Transactions on Visualization and Computer Graphics. 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Examining safety of biocolourants from fungal and plant sources-examples from Cortinarius and Tapinella, Salix and Tanacetum spp. and dyed woollen fabrics

Räisänen, R., Primetta, A., Nikunen, S., Honkalampi, U., Nygren, H., Pihlava, J. M., Berghe, I. V. & von Wright, A., May 2020, In : Antibiotics. 9, 5, 266.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

High throughput, small scale methods to characterise the growth of marine fungi

Tamminen, A., Happonen, P., Barth, D., Holmström, S. & Wiebe, M. G., Aug 2020, In : PLoS ONE. 15, 8, p. e0236822 e0236822.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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Metabolite profiling and mechanisms of bioactivity of snake autolysate - A traditional Uzbek medicine

Akbarov, U. S., Pozharitskaya, O. N., Laakso, I., Seppänen-Laakso, T., Urakova, I. N., Vuorela, H., Makarov, V. G. & Shikov, A. N., 25 Mar 2020, In : Journal of Ethnopharmacology. 250, 112459.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Plant cell cultures as food—aspects of sustainability and safety

Häkkinen, S. T., Nygren, H., Nohynek, L., Puupponen-Pimiä, R., Heiniö, R. L., Maiorova, N., Rischer, H. & Ritala, A., Sep 2020, (Accepted/In press) In : Plant Cell Reports.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2 Citations (Scopus)
2019

A deletion in the STA1 promoter determines maltotriose and starch utilization in STA1+ Saccharomyces cerevisiae strains

Krogerus, K., Magalhães, F., Kuivanen, J. & Gibson, B., 1 Sep 2019, In : Applied Microbiology and Biotechnology. 103, 18, p. 7597-7615 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
6 Citations (Scopus)

A Small In Vitro Fermentation Model for Screening the Gut Microbiota Effects of Different Fiber Preparations

Tsitko, I., Wiik-Miettinen, F., Mattila, O., Rosa-Sibakov, N., Seppänen-Laakso, T., Maukonen, J., Nordlund, E. & Saarela, M., 18 Apr 2019, In : International Journal of Molecular Sciences. 20, 8, 1925.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
7 Citations (Scopus)

Development of microtiter plate scale CRISPR/Cas9 transformation method for Aspergillus niger based on in vitro assembled ribonucleoprotein complexes

Kuivanen, J., Korja, V., Holmström, S. & Richard, P., 15 Mar 2019, In : Fungal Biology and Biotechnology. 6, 3, 12 p., 3.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
8 Citations (Scopus)

Evaluation of synthetic formaldehyde and methanol assimilation pathways in Yarrowia lipolytica

Vartiainen, E., Blomberg, P., Ilmén, M., Andberg, M., Toivari, M. & Penttilä, M., 17 Dec 2019, In : Fungal Biology and Biotechnology. 6, 27.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Methyljasmonate Elicitation Increases Terpenoid Indole Alkaloid Accumulation in Rhazya stricta Hairy Root Cultures

Akhgari, A., Laakso, I., Maaheimo, H., Choi, Y. H., Seppänen-Laakso, T., Oksman-Caldentey, K-M. & Rischer, H., 22 Nov 2019, In : Plants. 8, 12, 534.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2018

Acidipropionibacterium virtanenii sp. nov., isolated from malted barley

Deptula, P., Smolander, O. P., Laine, P., Roberts, R. J., Edelmann, M., Peltola, P., Piironen, V., Paulin, L., Storgards, E., Savijoki, K., Laitila, A., Auvinen, P. & Varmanen, P., 29 Aug 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 10, p. 3175-3183 9 p.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

A High-Throughput Workflow for CRISPR/Cas9 Mediated Combinatorial Promoter Replacements and Phenotype Characterization in Yeast

Kuivanen, J., Holmström, S., Lehtinen, B., Penttilä, M. & Jäntti, J., 1 Sep 2018, In : Biotechnology Journal. 13, 9, 1700593.

Research output: Contribution to journalArticleScientificpeer-review

3 Citations (Scopus)

A universal gene expression system for fungi

Rantasalo, A., Landowski, C. P., Kuivanen, J., Korppoo, A., Reuter, L., Koivistoinen, O., Valkonen, M., Penttilä, M., Jäntti, J. & Mojzita, D., 1 Jan 2018, In : Nucleic Acids Research. 46, 18, 15 p., e111.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
14 Citations (Scopus)

Biotransformation of Cyclodextrine-Complexed Semisynthetic Betulin Derivatives by Plant Cells

Häkkinen, S. T., Nygren, H., Maiorova, N., Haavikko, R., Alakurtti, S., Yli-Kauhaluoma, J., Rischer, H. & Oksman-Caldentey, K. M., 1 Jul 2018, In : Planta Medica. 84, 9-10, p. 743-748 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Characterisation of barley-associated bacteria and their impact on wort separation performance

Laitila, A., Manninen, J., Priha, O., Smart, K., Tsitko, I. & James, S., 1 Jan 2018, In : Journal of the Institute of Brewing. 124, 4, p. 314-324 11 p.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Enhanced wort fermentation with de novo lager hybrids adapted to high-ethanol environments

Krogerus, K., Holmström, S. & Gibson, B., 1 Feb 2018, In : Applied and Environmental Microbiology. 84, 4, e02302-17.

Research output: Contribution to journalArticleScientificpeer-review

15 Citations (Scopus)

Enzymatic Interesterification of Heterotrophic Microalgal Oil with Rapeseed Oil to Decrease the Levels of Tripalmitin

Bogevik, A. S., Nygren, H., Balle, T., Haugsgjerd, B. O. & Kousoulaki, K., 1 Jul 2018, In : European Journal of Lipid Science and Technology. 120, 7, 1800063.

Research output: Contribution to journalArticleScientificpeer-review

3 Citations (Scopus)

Euglena gracilis growth and cell composition under different temperature, light and trophic conditions

Wang, Y., Seppänen-Laakso, T., Rischer, H. & Wiebe, M. G., 1 Apr 2018, In : PLoS ONE. 13, 4, e0195329.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
6 Citations (Scopus)

Interlaboratory coverage test on plant food bioactive compounds and their metabolites by mass spectrometry-based untargeted metabolomics

Koistinen, V. M., da Silva, A. B., Abrankó, L., Low, D., Villalba, R. G., Barberán, F. T., Landberg, R., Savolainen, O., Alvarez-Acero, I., de Pascual-Teresa, S., Van Poucke, C., Almeida, C., Petrásková, L., Valentová, K., Durand, S., Wiczkowski, W., Szawara-Nowak, D., González-Domínguez, R., Llorach, R., Andrés-Lacueva, C. & 5 others, Aura, A. M., Seppänen-Laakso, T., Hanhineva, K., Manach, C. & Bronze, M. R., 1 Sep 2018, In : Metabolites. 8, 3, 46.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
8 Citations (Scopus)

In Vitro Gut Metabolism of [U-13C]-Quinic Acid, The Other Hydrolysis Product of Chlorogenic Acid

Naranjo Pinta, M., Montoliu, I., Aura, A. M., Seppänen-Laakso, T., Barron, D. & Moco, S., 1 Nov 2018, In : Molecular Nutrition and Food Research. 62, 22, 1800396.

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

Lactobacillus backii and Pediococcus damnosus isolated from 170-year-old beer recovered from a shipwreck lack the metabolic activities required to grow in modern lager beer

Kajala, I., Bergsveinson, J., Friesen, V., Redekop, A., Juvonen, R., Storgårds, E. & Ziola, B., 2018, In : FEMS Microbiology Ecology. 94, 1, 10 p., fix152.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2 Citations (Scopus)

Management of barley-associated bacterial biofilms: A key to improving wort separation

Tsitko, I., Manninen, J., Smart, K., James, S. & Laitila, A., 1 Jan 2018, In : Journal of the Institute of Brewing. 124, 4, p. 325-335 11 p.

Research output: Contribution to journalArticleScientificpeer-review

NADPH-dependent 5-keto-D-gluconate reductase is a part of the fungal pathway for D-glucuronate catabolism

Kuivanen, J. & Richard, P., 1 Jan 2018, In : FEBS Letters. 592, 1, p. 71-77 7 p.

Research output: Contribution to journalArticleScientificpeer-review

4 Citations (Scopus)

Plant cells as food: A concept taking shape

Nordlund, E., Lille, M., Silventoinen, P., Nygren, H., Seppänen-Laakso, T., Mikkelson, A., Aura, A-M., Heiniö, R-L., Nohynek, L., Puupponen-Pimiä, R. & Rischer, H., 2018, In : Food Research International. 107, p. 297–305 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
12 Citations (Scopus)

Synthetic Toolkit for Complex Genetic Circuit Engineering in Saccharomyces cerevisiae

Rantasalo, A., Kuivanen, J., Penttilä, M., Jäntti, J. & Mojzita, D., 15 Jun 2018, In : ACS Synthetic Biology. 7, 6, p. 1573-1587 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
12 Citations (Scopus)
2017

Characterization of feather-degrading bacterial populations from birds' nests - Potential strains for biomass production for animal feed

Saarela, M., Berlin, M., Nygren, H., Lahtinen, P., Honkapää, K., Lantto, R. & Maukonen, J., 2017, In : International Biodeterioration and Biodegradation. 123, p. 262-268 7 p.

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

Chemical profiling and bioactivity of body wall lipids from strongylocentrotus droebachiensis

Shikov, A. N., Laakso, I., Pozharitskaya, O. N., nen-Laakso, T. S., Krishtopina, A. S., Makarova, M. N., Vuorela, H. & Makarov, V., 24 Nov 2017, In : Marine Drugs. 15, 12, 365.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2 Citations (Scopus)

Clustered genes encoding 2-keto-L-gulonate reductase and L-idonate 5-dehydrogenase in the novel fungal D-glucuronic acid pathway

Kuivanen, J., Arvas, M. & Richard, P., 2017, In : Frontiers in Microbiology. 8, FEB, 10 p., 225.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
12 Citations (Scopus)

Effect of Plant Antimicrobial Agents Containing Marinades on Storage Stability and Microbiological Quality of Broiler Chicken Cuts Packed with Modified Atmosphere Packaging

Alakomi, H-L., Maukonen, J., Honkapää, K., Storgårds, E., Quirin, K-W., Yang, B. & Saarela, M., 1 Oct 2017, In : Journal of Food Protection. 80, 10, p. 1689-1696

Research output: Contribution to journalArticleScientificpeer-review

Open Access
3 Citations (Scopus)

High Yield Protein Extraction from Brewer's Spent Grainwith Novel Carboxylate Salt: Urea Aqueous Deep Eutectic Solvents

Wahlström, R., Rommi, K., Willberg-Keyriläinen, P., Ercili-Cura, D., Holopainen-Mantila, U., Hiltunen, J., Mäkinen, O., Nygren, H., Mikkelson, A. & Kuutti, L., 1 Jan 2017, In : ChemistrySelect. 2, 29, p. 9355-9363 9 p.

Research output: Contribution to journalArticleScientificpeer-review

7 Citations (Scopus)

Inheritance of brewing-relevant phenotypes in constructed Saccharomyces cerevisiae x Saccharomyces eubayanus hybrids

Krogerus, K., Seppänen-Laakso, T., Castillo, S. & Gibson, B., 21 Apr 2017, In : Microbial Cell Factories. 16, 1, 66.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
25 Citations (Scopus)

Metabolite profiling of the carnivorous pitcher plants Darlingtonia and Sarracenia

Hotti, H., Gopalacharyulu, P., Seppänen-Laakso, T. & Rischer, H., 1 Feb 2017, In : PLoS ONE. 12, 2, 21 p., e0171078.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

Polyketide-derived alkaloids and anthraquinones in Aloe plants and cell cultures

Hotti, H., Häkkinen, S., Rischer, H. & Seppänen-Laakso, T., 2017, In : Journal of Plant Biotechnology Research. 1, 1, p. 1-15 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Prepartal overfeeding alters the lipidomic profiles in the liver and the adipose tissue of transition dairy cows

Qin, N., Kokkonen, T., Salin, S., Seppänen-Laakso, T., Taponen, J., Vanhatalo, A. & Elo, K., 1 Feb 2017, In : Metabolomics. 13, 2, 21.

Research output: Contribution to journalArticleScientificpeer-review

3 Citations (Scopus)

Variability in the production of tannins and other polyphenols in cell cultures of 12 Nordic plant species

Suvanto, J., Nohynek, L., Seppänen-Laakso, T., Rischer, H., Salminen, J-P. & Puupponen-Pimiä, R., Aug 2017, In : Planta. 246, 2, p. 227-241 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
15 Citations (Scopus)
2016

A healthy Nordic diet alters the plasma lipidomic profile in adults with features of metabolic syndrome in a multicenter randomized dietary intervention

Lankinen, M. A., Schwab, U. S., Kolehmainen, M., Paananen, J., Nygrén, H., Seppänen-Laakso, T. E., Poutanen, K. S., Hyötyläinen, T., Risérus, U., Savolainen, M. J., Hukkanen, J. & Brader, L., 2016, In : Journal of Nutrition. 146, 4, p. 662-672

Research output: Contribution to journalArticleScientificpeer-review

37 Citations (Scopus)

A novel pathway for fungal D-glucuronate catabolism contains an L-idonate forming 2-keto-L-gulonate reductase

Kuivanen, J., Sugai-Guérios, M. H., Arvas, M. & Richard, P., 2016, In : Scientific Reports. 6, 26329.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
14 Citations (Scopus)

Bacterial populations on brewery filling hall surfaces as revealed by next-generation sequencing

Priha, O., Raulio, M., Maukonen, J., Vehviläinen, A-K. & Storgårds, E., 2016, In : Biofouling. 32, 5, p. 571-581

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Biofouling on Coated Carbon Steel in Cooling Water Cycles Using Brackish Seawater

Rajala, P., Sohlberg, E., Priha, O., Tsitko, I., Väisänen, H., Tausa, M. & Carpén, L., 1 Dec 2016, In : Journal of Marine Science and Engineering. 4, 4, 15 p., 74.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

Engineering a filamentous fungus for l-rhamnose extraction

Kuivanen, J. & Richard, P., 2016, In : AMB Express. 6, 27

Research output: Contribution to journalArticleScientificpeer-review

Open Access
3 Citations (Scopus)

Engineering Aspergillus niger for galactaric acid production: elimination of galactaric acid catabolism by using RNA sequencing and CRISPR/Cas9

Kuivanen, J., Wang, J. & Richard, P., 2016, In : Microbial Cell Factories. 15, 210.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
51 Citations (Scopus)

Genome wide analysis of protein production load in Trichoderma reesei

Pakula, T., Nygrén, H., Barth, D., Heinonen, M., Castillo, S. D., Penttilä, M. E. & Arvas, M., 2016, In : Biotechnology for Biofuels. 9, 26 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
12 Citations (Scopus)

Imbalance of plasma amino acids, metabolites and lipids in patients with lysinuric protein intolerance (LPI)

Kurko, J., Tringham, M., Tanner, L., Näntö-Salonen, K., Vähä-Mäkilä, M., Nygren, H., Pöhö, P., Lietzen, N., Mattila, I., Olkku, A., Hyötyläinen, T., Oresic, M., Simell, O., Niinikoski, H. & Mykkänen, J., 2016, In : Metabolism: Clinical and Experimental. 65, 9, p. 1361-1375

Research output: Contribution to journalArticleScientificpeer-review

7 Citations (Scopus)

Interaction between dietary lipids and gut microbiota regulates hepatic cholesterol metabolism

Caesar, R., Nygrén, H., Oresic, M. & Bäckhed, F., 2016, In : Journal of Lipid Research. 57, 3, p. 474-781

Research output: Contribution to journalArticleScientificpeer-review

36 Citations (Scopus)

The introduction of the fungal D-galacturonate pathway enables the consumption of D-galacturonic acid by Saccharomyces cerevisiae

Biz, A., Sugai-Guérios, M. H., Kuivanen, J., Maaheimo, H., Krieger, N., Mitchell, D. A. & Richard, P., 2016, In : Microbial Cell Factories. 15, 144

Research output: Contribution to journalArticleScientificpeer-review

Open Access
10 Citations (Scopus)

Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

Castillo, S., Barth, D., Arvas, M., Pakula, T. M., Pitkänen, E., Blomberg, P., Seppänen-Laakso, T., Nygren, H., Sivasiddarthan, D., Penttilä, M. & Oja, M., 2016, In : Biotechnology for Biofuels. 9, 252, 20 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
5 Citations (Scopus)
2015

Analysis of Beers from an 1840s’ Shipwreck

Londesborough, J., Dresel, M., Gibson, B., Juvonen, R., Holopainen, U., Mikkelson, A., Seppänen-Laakso, T., Viljanen, K., Virtanen, H., Wilpola, A., Hofmann, T. & Wilhelmson, A., 2015, In : Journal of Agricultural and Food Chemistry. 63, 9, p. 2525-2536

Research output: Contribution to journalArticleScientificpeer-review

5 Citations (Scopus)