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2020

Controllable coacervation of recombinantly produced spider silk protein using kosmotropic salts

Mohammadi, P., Jonkergouw, C., Beaune, G., Engelhardt, P., Kamada, A., Timonen, J. V. I., Knowles, T. P. J., Penttilä, M. & Linder, M. B., 15 Feb 2020, In : Journal of Colloid and Interface Science. 560, p. 149-160 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Convergent evolution of processivity in bacterial and fungal cellulases

Uchiyama, T., Uchihashi, T., Nakamura, A., Watanabe, H., Kaneko, S., Samejima, M. & Igarashi, K., 18 Aug 2020, In : Proceedings of the National Academy of Sciences of the United States of America. 117, 33, p. 19896-19903 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Genetically engineered protein based nacre-like nanocomposites with superior mechanical and electrochemical performance

Dhar, P., Phiri, J., Szilvay, G. R., Westerholm-Parvinen, A., Maloney, T. & Laaksonen, P., 1 Jan 2020, In : Journal of Materials Chemistry A: Materials for Energy and Sustainability. 8, 2, p. 656-669 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Lignin nanoparticles modified with tall oil fatty acid for cellulose functionalization

Setälä, H., Alakomi, H-L., Paananen, A., Szilvay, G., Kellock, M., Lievonen, M., Liljeström, V., Hult, E-L., Lintinen, K., Österberg, M. & Kostiainen, M. A., 1 Jan 2020, In : Cellulose. 27, p. 273-284 12 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
5 Citations (Scopus)
1 Downloads (Pure)

Modulating the Mechanical Performance of Macroscale Fibers through Shear-Induced Alignment and Assembly of Protein Nanofibrils

Kamada, A., Levin, A., Toprakcioglu, Z., Shen, Y., Lutz-Bueno, V., Baumann, K. N., Mohammadi, P., Linder, M. B., Mezzenga, R. & Knowles, T. P. J., 1 Mar 2020, In : Small. 16, 9, 1904190.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Reduction of FODMAP content by bioprocessing

Nyyssölä, A., Ellilä, S., Nordlund, E. & Poutanen, K., May 2020, In : Trends in Food Science and Technology. 99, p. 257-272 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Structural analysis of β-L-arabinobiose-binding protein in the metabolic pathway of hydroxyproline-rich glycoproteins in Bifidobacterium longum

Miyake, M., Terada, T., Shimokawa, M., Sugimoto, N., Arakawa, T., Shimizu, K., Igarashi, K., Fujita, K. & Fushinobu, S., 4 Apr 2020, In : FEBS Journal. 16 p.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

The Lipomyces starkeyi gene Ls120451 encodes a cellobiose transporter that enables cellobiose fermentation in Saccharomyces cerevisiae

de Ruijter, J., Igarashi, K. & Penttilä, M., 1 May 2020, In : FEMS Yeast Research. 20, 3, 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2019

Bioconjugation with Aminoalkylhydrazine for Efficient Mass Spectrometry-Based Detection of Small Carbonyl Compounds

Thangaraj, S. K., Voutilainen, S., Andberg, M., Koivula, A., Jänis, J. & Rouvinen, J., 20 Aug 2019, In : ACS Omega. 4, 8, p. 13447 - 13453 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
1 Citation (Scopus)

Bridging the Micro-Macro Gap between Single-Molecular Behavior and Bulk Hydrolysis Properties of Cellulase

Ezaki, T., Nishinari, K., Samejima, M. & Igarashi, K., 7 Mar 2019, In : Physical Review Letters. 122, 9, 5 p., 098102.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Cloning of novel bacterial xylanases from lignocellulose-enriched compost metagenomic libraries

Ellilä, S., Bromann, P., Nyyssönen, M., Itävaara, M., Koivula, A., Paulin, L. & Kruus, K., 2019, In : AMB Express. 9, 1, 124.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2 Citations (Scopus)

Crystal Structure of the Catalytic and Cytochrome b Domains in a Eukaryotic Pyrroloquinoline Quinone-Dependent Dehydrogenase

Takeda, K., Ishida, T., Yoshida, M., Samejima, M., Ohno, H., Igarashi, K. & Nakamura, N., 1 Jan 2019, In : Applied and Environmental Microbiology. 85, 24, 13 p., e01692-19.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

Effect of hydrothermal pretreatment severity on lignin inhibition in enzymatic hydrolysis

Kellock, M., Maaheimo, H., Marjamaa, K., Rahikainen, J., Zhang, H., Holopainen-Mantila, U., Ralph, J., Tamminen, T., Felby, C. & Kruus, K., 2019, In : Bioresource Technology. 280, p. 303-312 10 p.

Research output: Contribution to journalArticleScientificpeer-review

13 Citations (Scopus)

Electrode material studies and cell voltage characteristics of the in situ water electrolysis performed in a pH-neutral electrolyte in bioelectrochemical systems

Givirovskiy, G., Ruuskanen, V., Ojala, L. S., Lienemann, M., Kokkonen, P. & Ahola, J., 14 May 2019, In : Heliyon. 5, 5, e01690.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
5 Citations (Scopus)

Evaluation of synthetic formaldehyde and methanol assimilation pathways in Yarrowia lipolytica

Vartiainen, E., Blomberg, P., Ilmén, M., Andberg, M., Toivari, M. & Penttilä, M., 17 Dec 2019, In : Fungal Biology and Biotechnology. 6, 27.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

In vitro reconstitution and characterisation of the oxidative d-xylose pathway for production of organic acids and alcohols

Boer, H., Andberg, M., Pylkkänen, R., Maaheimo, H. & Koivula, A., 2019, In : AMB Express. 9, 1, 48.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2 Citations (Scopus)

Microbial degradation of polyacrylamide and the deamination product polyacrylate

Nyyssölä, A. & Ahlgren, J., 1 Mar 2019, In : International Biodeterioration and Biodegradation. 139, p. 24-33 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

Modular protein architectures for pH-dependent interactions and switchable assembly of nanocellulose

Voutilainen, S., Paananen, A., Lille, M. & Linder, M. B., 29 Jun 2019, In : International Journal of Biological Macromolecules. 137, p. 270-276 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
1 Citation (Scopus)

Protein components of water extracts from fruiting bodies of the reishi mushroom Ganoderma lucidum contribute to the production of functional molecules

Kumakura, K., Hori, C., Matsuoka, H., Igarashi, K. & Samejima, M., 30 Jan 2019, In : Journal of the Science of Food and Agriculture. 99, 2, p. 529-535 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Self-Assembling Protein-Polymer Bioconjugates for Surfaces with Antifouling Features and Low Nonspecific Binding

Liu, Y., Nevanen, T. K., Paananen, A., Kempe, K., Wilson, P., Johansson, L. S., Joensuu, J. J., Linder, M. B., Haddleton, D. M. & Milani, R., 23 Jan 2019, In : ACS Applied Materials & Interfaces. 11, 3, p. 3599-3608 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
6 Citations (Scopus)

The biogeochemistry of gas generation from low-level nuclear waste: Microbiological characterization during 18 years study under in situ conditions

Vikman, M., Marjamaa, K., Nykyri, M., Small, J., Miettinen, H., Liisa, H., Haavisto, T. & Itävaara, M., Jun 2019, In : Applied Geochemistry. 105, p. 55-67 13 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
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4 Downloads (Pure)

The liquid fraction from hydrothermal pretreatment of wheat straw provides lytic polysaccharide monooxygenases with both electrons and H2O2 co-substrate

Kont, R., Pihlajaniemi, V., Borisova, A. S., Aro, N., Marjamaa, K., Loogen, J., Büchs, J., Eijsink, V. G. H., Kruus, K. & Väljamaë, P., 8 Oct 2019, In : Biotechnology for Biofuels. 12, 1, 235.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
1 Citation (Scopus)
2018

A glucose/oxygen enzymatic fuel cell based on gold nanoparticles modified graphene screen-printed electrode. Proof-of-concept in human saliva

Bollella, P., Fusco, G., Stevar, D., Gorton, L., Ludwig, R., Ma, S., Boer, H., Koivula, A., Tortolini, C., Favero, G., Antiochia, R. & Mazzei, F., 2018, In : Sensors and Actuators B: Chemical. 256, p. 921-930 10 p.

Research output: Contribution to journalArticleScientificpeer-review

35 Citations (Scopus)

Application of ammonia pretreatment to enable enzymatic hydrolysis of hardwood biomass

Sakuragi, K., Igarashi, K. & Samejima, M., 1 Feb 2018, In : Polymer Degradation and Stability. 148, p. 19-25 7 p.

Research output: Contribution to journalArticleScientificpeer-review

15 Citations (Scopus)

Enzymatically and chemically oxidized lignin nanoparticles for biomaterial applications

Mattinen, M. L., Valle-Delgado, J. J., Leskinen, T., Anttila, T., Riviere, G., Sipponen, M., Paananen, A., Lintinen, K., Kostiainen, M. & Österberg, M., 1 Apr 2018, In : Enzyme and Microbial Technology. 111, p. 48-56 9 p.

Research output: Contribution to journalArticleScientificpeer-review

22 Citations (Scopus)

Enzyme biotechnology in degradation and modification of plant cell wall polymers

Marjamaa, K. & Kruus, K., 1 Sep 2018, In : Physiologia Plantarum. 164, 1, p. 106-118 13 p.

Research output: Contribution to journalArticleScientificpeer-review

4 Citations (Scopus)

Interfacial Behavior of Recombinant Spider Silk Protein Parts Reveals Cues on the Silk Assembly Mechanism

Nilebäck, L., Arola, S., Kvick, M., Paananen, A., Linder, M. B. & Hedhammar, M., 5 Sep 2018, In : Langmuir. 34, 39, p. 11795-11805 11 p.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Secretome analysis of the basidiomycete Phanerochaete chrysosporium grown on ammonia-treated lignocellulosic biomass from birch wood

Sakuragi, K., Hori, C., Igarashi, K. & Samejima, M., 1 Dec 2018, In : Journal of Wood Science. 64, 6, p. 845-853 9 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
1 Citation (Scopus)

Single-Molecule Force Spectroscopy Reveals Self-Assembly Enhanced Surface Binding of Hydrophobins

Li, B., Wang, X., Li, Y., Paananen, A., Szilvay, G. R., Qin, M., Wang, W. & Cao, Y., 2 Jul 2018, In : Chemistry - A European Journal. 24, 37, p. 9224-9228 5 p.

Research output: Contribution to journalArticleScientificpeer-review

4 Citations (Scopus)

Structural and thermodynamic insights into -1,2-glucooligosaccharide capture by a solute-binding protein in Listeria innocua

Abe, K., Sunagawa, N., Terada, T., Takahashi, Y., Arakawa, T., Igarashi, K., Samejima, M., Nakai, H., Taguchi, H., Nakajima, M. & Fushinobu, S., 8 Jun 2018, In : Journal of Biological Chemistry. 293, 23, p. 8812-8828 17 p.

Research output: Contribution to journalArticleScientificpeer-review

10 Citations (Scopus)

The crystal structure of D-xylonate dehydratase reveals functional features of enzymes from the Ilv/ED dehydratase family

Rahman, M. M., Andberg, M., Koivula, A., Rouvinen, J. & Hakulinen, N., 1 Dec 2018, In : Scientific Reports. 8, 1, 865.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
8 Citations (Scopus)
2017

A novel Colletotrichum graminicola raffinose oxidase in the AA5 family

Blomster Andberg, M., Mollerup, F., Parikka, K., Koutaniemi, S., Boer, H., Juvonen, M., Master, E., Tenkanen, M. & Kruus, K., 2017, In : Applied and Environmental Microbiology. 83, 20, 17 p., e01383.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
7 Citations (Scopus)

Crystal structure and substrate specificity modification of acetyl xylan esterase from Aspergillus luchuensis

Komiya, D., Hori, A., Ishida, T., Igarashi, K., Samejima, M., Koseki, T. & Fushinobu, S., 2017, In : Applied and Environmental Microbiology. 83, 20, e01251-17.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Crystal structure of a family 6 cellobiohydrolase from the basidiomycete Phanerochaete chrysosporium

Tachioka, M., Nakamura, A., Ishida, T., Igarashi, K. & Samejima, M., 2017, In : Acta Crystallographica Section F: Structural Biology Communications. 73, 7, p. 398-403 6 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
3 Citations (Scopus)

Elastic and pH responsive hybrid interfaces created with engineered resilin and nanocellulose

Fang, W., Paananen, A., Vitikainen, M., Koskela, S., Westerholm-Parvinen, A., Joensuu, J., Landowski, C., Penttilä, M., Linder, M. B. & Laaksonen, P., 12 Jun 2017, In : Biomacromolecules. 18, 6, p. 1866-1873 8 p.

Research output: Contribution to journalArticleScientificpeer-review

9 Citations (Scopus)

Fractionation process for the protective isolation of ergosterol and trehalose from microbial biomass

Pastinen, O., Nyyssölä, A., Pihlajaniemi, V. & Sipponen, M. H., 1 Jul 2017, In : Process Biochemistry. 58, p. 217-223 7 p.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Hydrophobin-nanofibrillated cellulose stabilized emulsions for encapsulation and release of BCS class II drugs

Paukkonen, H., Ukkonen, A., Szilvay, G., Yliperttula, M. & Laaksonen, T., 30 Mar 2017, In : European Journal of Pharmaceutical Sciences. 100, p. 238-248 11 p.

Research output: Contribution to journalArticleScientificpeer-review

14 Citations (Scopus)

Identification of the response of protein N-H vibrations in vibrational sum-frequency generation spectroscopy of aqueous protein films

Meister, K., Paananen, A. & Bakker, H., 1 Jan 2017, In : Physical Chemistry Chemical Physics. 19, 17, p. 10804-10807 4 p.

Research output: Contribution to journalArticleScientificpeer-review

5 Citations (Scopus)

Interdomain flip-flop motion visualized in flavocytochrome cellobiose dehydrogenase using high-speed atomic force microscopy during catalysis

Harada, H., Onoda, A., Uchihashi, T., Watanabe, H., Sunagawa, N., Samejima, M., Igarashi, K. & Hayashi, T., 1 Sep 2017, In : Chemical Science. 8, 9, p. 6561-6565 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
15 Citations (Scopus)

Lignin-derived inhibition of monocomponent cellulases and a xylanase in the hydrolysis of lignocellulosics

Kellock, M., Rahikainen, J., Marjamaa, K. & Kruus, K., 11 Feb 2017, In : Bioresource Technology. 232, p. 183-191 9 p.

Research output: Contribution to journalArticleScientificpeer-review

33 Citations (Scopus)

Lubrication of aluminium versus diamond-like carbon contacts with hydrophobin proteins

Shi, Z., Hakala, T. J., Metsäjoki, J., Szilvay, G. R. & Li, F., 2 Jan 2017, In : Surface Engineering. 33, 1, p. 49-55 7 p.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Molecular structure of hydrophobins studied with site-directed mutagenesis and vibrational sum-frequency generation spectroscopy

Meister, K., Paananen, A., Speet, B., Lienemann, M. & Bakker, H., 12 Oct 2017, In : The Journal of Physical Chemistry B. 121, 40, p. 9398-9402 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
10 Citations (Scopus)

Observation of pH-Induced Protein Reorientation at the Water Surface

Meister, K., Roeter, S. J., Paananen, A., Woutersen, S., Versluis, J., Szilvay, G. R. & Bakker, H. J., 20 Apr 2017, In : The Journal of Physical Chemistry Letters. 8, 8, p. 1772-1776 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
13 Citations (Scopus)

Pure protein bilayers and vesicles from native fungal hydrophobins

Hähl, H., Vargas, J., Griffo, A., Laaksonen, P., Szilvay, G., Lienemann, M., Jacobs, K., Seemann, R. & Fleury, J-B., 1 Jan 2017, In : Advanced Materials. 29, 1, 1602888.

Research output: Contribution to journalArticleScientificpeer-review

14 Citations (Scopus)

Single-Molecule Force Spectroscopy Study on Modular Resilin Fusion Protein

Griffo, A., Hähl, H., Grandthyll, S., Müller, F., Paananen, A., Ilmén, M., Szilvay, G., Landowski, C. P., Penttilä, M., Jacobs, K. & Laaksonen, P., 1 Jan 2017, In : ACS Omega. 2, 10, p. 6906-6915 10 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

The Crystal Structure of a Bacterial l -Arabinonate Dehydratase Contains a [2Fe-2S] Cluster

Rahman, M., Andberg, M., Thangaraj, S., Parkkinen, T., Penttilä, M., Jänis, J., Koivula, A., Rouvinen, J. & Hakulinen, N., 21 Jul 2017, In : ACS Chemical Biology. 12, 7, p. 1919-1927 9 p.

Research output: Contribution to journalArticleScientificpeer-review

10 Citations (Scopus)

The dynamics of multimer formation of the amphiphilic hydrophobin protein HFBII

Grunér, M. S., Paananen, A., Szilvay, G. & Linder, M. B., 1 Jul 2017, In : Colloids and Surfaces B: Biointerfaces. 155, July, p. 111-117 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

The plant cell-wall enzyme AtXTH3 catalyses covalent cross-linking between cellulose and cello-oligosaccharide

Shinohara, N., Sunagawa, N., Tamura, S., Yokoyama, R., Ueda, M., Igarashi, K. & Nishitani, K., 1 Jan 2017, In : Scientific Reports. 7, 46099.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
30 Citations (Scopus)
2016

A dual approach for improving homogeneity of a human-type N-glycan structure in Saccharomyces cerevisiae

Piirainen, M., Boer, H., de Ruijter, J. C. & Frey, A. D., 2016, In : Glycoconjugate Journal. 33, 2, p. 189-199

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

A lytic polysaccharide monooxygenase with broad xyloglucan specificity from the brown-rot fungus Gloeophyllum trabeum and its action on cellulose-xyloglucan complexes

Kojima, Y., Várnai, A., Ishida, T., Sunagawa, N., Petrovic, D. M., Igarashi, K., Jellison, J., Goodell, B., Alfredsen, G., Westereng, B., Eijsink, V. G. H. & Yoshida, M., 2016, In : Applied and Environmental Microbiology. 82, 22, p. 6557-6572

Research output: Contribution to journalArticleScientificpeer-review

Open Access
46 Citations (Scopus)