Research Output

2020

Adaptive laboratory evolution of ale and lager yeast for improved brewing efficiency and beer quality

Gibson, B., Dahabieh, M., Krogerus, K., Jouhten, P., Magalhaes, F., Pereira, R., Siewers, V. & Vidgren, V., 25 Mar 2020, In : Annual review of food science and technology. 11, p. 23-44 22 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

1 Citation (Scopus)

A re-evaluation of diastatic Saccharomyces cerevisiae strains and their role in brewing

Krogerus, K. & Gibson, B., May 2020, In : Applied Microbiology and Biotechnology. 104, 9, p. 3745-3756 12 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
1 Citation (Scopus)

Brewing potential of the wild yeast species Saccharomyces paradoxus

Nikulin, J., Vidgren, V., Krogerus, K., Magalhães, F., Valkeemäki, S., Kangas-Heiska, T. & Gibson, B., 2 Aug 2020, In : European Food Research and Technology. 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
5 Downloads (Pure)
2 Citations (Scopus)

Engineering marine fungi for conversion of d-galacturonic acid to mucic acid

Vidgren, V., Halinen, S., Tamminen, A., Olenius, S. & Wiebe, M. G., 31 Jul 2020, In : Microbial Cell Factories. 19, 1, 156.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
9 Downloads (Pure)

High throughput, small scale methods to characterise the growth of marine fungi

Tamminen, A., Happonen, P., Barth, D., Holmström, S. & Wiebe, M. G., Aug 2020, In : PLoS ONE. 15, 8, p. e0236822 e0236822.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
16 Downloads (Pure)

Lachancea fermentati Strains Isolated From Kombucha: Fundamental Insights, and Practical Application in Low Alcohol Beer Brewing

Bellut, K., Krogerus, K. & Arendt, E. K., 23 Apr 2020, In : Frontiers in Microbiology. 11, 764.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
File
1 Citation (Scopus)
9 Downloads (Pure)

Molecular profiling of beer wort fermentation diversity across natural Saccharomyces eubayanus isolates

Mardones, W., Villarroel, C. A., Krogerus, K., Tapia, S. M., Urbina, K., Oporto, C. I., O’Donnell, S., Minebois, R., Nespolo, R., Fischer, G., Querol, A., Gibson, B. & Cubillos, F. A., 1 Jul 2020, In : Microbial Biotechnology. 13, 4, p. 1012-1025 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2 Citations (Scopus)

Multimodal Microorganism Development: Integrating Top-Down Biological Engineering with Bottom-Up Rational Design

Dahabieh, M. S., Thevelein, J. M. & Gibson, B., Mar 2020, In : Trends in Biotechnology. 38, 3, p. 241-253 13 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

1 Citation (Scopus)

Reduction of FODMAP content by bioprocessing

Nyyssölä, A., Ellilä, S., Nordlund, E. & Poutanen, K., May 2020, In : Trends in Food Science and Technology. 99, p. 257-272 16 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access

Sourdough derived strains of Saccharomyces cerevisiae and their potential for farmhouse ale brewing

Catallo, M., Nikulin, J., Johansson, L., Krogerus, K., Laitinen, M., Magalhães, F., Piironen, M., Mikkelson, A., Randazzo, C. L., Solieri, L. & Gibson, B., 2020, In : Journal of the Institute of Brewing. 126, 2, p. 168-175 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
1 Citation (Scopus)
2019

A deletion in the STA1 promoter determines maltotriose and starch utilization in STA1+ Saccharomyces cerevisiae strains

Krogerus, K., Magalhães, F., Kuivanen, J. & Gibson, B., 1 Sep 2019, In : Applied Microbiology and Biotechnology. 103, 18, p. 7597-7615 19 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
6 Citations (Scopus)

Bacterial protein for food and feed generated via renewable energy and direct air capture of CO2: Can it reduce land and water use?

Sillman, J., Nygren, L., Kahiluoto, H., Ruuskanen, V., Tamminen, A., Bajamundi, C., Nappa, M., Wuokko, M., Lindh, T., Vainikka, P., Pitkänen, J. P. & Ahola, J., 2019, In : Global Food Security. 22, p. 25-32 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
7 Citations (Scopus)

Bioprospecting for brewers: Exploiting natural diversity for naturally diverse beers

Cubillos, F. A., Gibson, B., Grijalva-Vallejos, N., Krogerus, K. & Nikulin, J., 1 Jun 2019, In : Yeast. 36, 6, p. 383-398 16 p.

Research output: Contribution to journalReview ArticleScientificpeer-review

9 Citations (Scopus)

Cloning of novel bacterial xylanases from lignocellulose-enriched compost metagenomic libraries

Ellilä, S., Bromann, P., Nyyssönen, M., Itävaara, M., Koivula, A., Paulin, L. & Kruus, K., 2019, In : AMB Express. 9, 1, 124.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2 Citations (Scopus)

Dynamic assembly of class II hydrophobins from T. reesei at the air-water interface

Hähl, H., Griffo, A., Safaridehkohneh, N., Heppe, J., Backes, S., Lienemann, M., Linder, M. B., Santen, L., Laaksonen, P. & Jacobs, K., 20 Jun 2019, In : Langmuir. 35, 28, p. 9202 - 9212 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Electrode material studies and cell voltage characteristics of the in situ water electrolysis performed in a pH-neutral electrolyte in bioelectrochemical systems

Givirovskiy, G., Ruuskanen, V., Ojala, L. S., Lienemann, M., Kokkonen, P. & Ahola, J., 14 May 2019, In : Heliyon. 5, 5, e01690.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
5 Citations (Scopus)
Open Access

Fermentointiprosessin optimointi voihapon tuottamiseksi elintarviketeollisuuden sivuvirroista

Turunen, R., Sep 2019, 45 p.

Research output: ThesisBachelor's thesis

Open Access
File
136 Downloads (Pure)

In situ water electrolyzer stack for an electrobioreactor

Givirovskiy, G., Ruuskanen, V., Ojala, L. S., Kokkonen, P. & Ahola, J., 2019, In : Energies. 12, 10, 1904.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
3 Citations (Scopus)

Novel genetic tools that enable highly pure protein production in Trichoderma reesei

Rantasalo, A., Vitikainen, M., Paasikallio, T., Jäntti, J., Landowski, C. P. & Mojzita, D., 22 Mar 2019, In : Scientific Reports. 9, 1, 12 p., 5032.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
8 Citations (Scopus)

Over 2000-fold increased production of the leaderless bacteriocin garvicin KS by increasing gene dose and optimization of culture conditions

Telke, A. A., Ovchinnikov, K. V., Vuoristo, K., Mathiesen, G., Torstensen, T. & Diep, D. B., 5 Mar 2019, In : Frontiers in Microbiology. 10, p. 389 9 p., 389.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
Open Access

Production, Characterization, and Application of an Alginate Lyase, AMOR-PL7A, from Hot Vents in the Arctic Mid-Ocean Ridge

Vuoristo, K. S., Fredriksen, L., Oftebro, M., Arntzen, M., Aarstad, O. A., Stokke, R., Steen, I. H., Hansen, L. D., Schüller, R. B., Aachmann, F. L., Horn, S. J. & Eijsink, V. G. H., 13 Mar 2019, In : Journal of Agricultural and Food Chemistry. 67, 10, p. 2936-2945 10 p.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)
348 Downloads (Pure)
2018

Adhesion Properties of Freestanding Hydrophobin Bilayers

Hähl, H., Vargas, J. N., Jung, M., Griffo, A., Laaksonen, P., Lienemann, M., Jacobs, K., Seemann, R. & Fleury, J. B., 24 Jul 2018, In : Langmuir. 34, 29, p. 8542-8549 8 p.

Research output: Contribution to journalArticleScientificpeer-review

1 Citation (Scopus)

Alternative Saccharomyces interspecies hybrid combinations and their potential for low-temperature wort fermentation

Nikulin, J., Krogerus, K. & Gibson, B., 1 Jan 2018, In : Yeast. 35, 1, p. 113-127 15 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
20 Citations (Scopus)

Assessment of the scalability of a microtiter plate system for screening of oleaginous microorganisms

Kosa, G., Vuoristo, K., Horn, S. J., Zimmermann, B., Afseth, N. K., Kohler, A. & Shapaval, V., 4 Nov 2018, In : Applied Microbiology and Biotechnology. 102, 11, p. 4915-4925 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
6 Citations (Scopus)

A Unique Saccharomyces cerevisiae x Saccharomyces uvarum Hybrid Isolated From Norwegian Farmhouse Beer: Characterization and Reconstruction

Krogerus, K., Preiss, R. & Gibson, B., 24 Sep 2018, In : Frontiers in Microbiology. 9, SEP, 2253.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
10 Citations (Scopus)

Bits and biomass: A roadmap to the digitalisation-empowered bioeconomy

Leinonen, A. (ed.), Åkerman, M. (ed.), Kruus, K. (ed.), Asikainen, A. (ed.), Muhonen, T. (ed.), Kohl, J. (ed.), Ala-Ilomäki, J., Arvas, M., Backman, J., Hantula, J., Häme, T., Isto, P., Kangas, A., Lantto, R., Nieminen, K., Nordlund, E., Pastell, M., Peltola, R., Pesonen, L., Pitkänen, J-P. & 7 others, Piri, T., Pusenius, J., Seisto, A., Suomi, P., Utriainen, M., Viiri, H. & Väätäinen, K., 2018, VTT Technical Research Centre of Finland. 51 p. (VTT Visions; No. 12).

Research output: Book/ReportReport

Open Access

Comparative Assessment of Enzymatic Hydrolysis for Valorization of Different Protein-Rich Industrial Byproducts

Lapeña, D., Vuoristo, K., Kosa, G., Horn, S. J. & Eijsink, V. G. H., 24 Aug 2018, In : Journal of Agricultural and Food Chemistry. 66, 37, p. 9738-9749 12 p.

Research output: Contribution to journalArticleScientificpeer-review

12 Citations (Scopus)
Open Access
8 Citations (Scopus)

Differential evolution of Strecker and non-Strecker aldehydes during aging of pale and dark beers

Gibson, B., Aumala, V., Heiniö, R-L., Mikkelson, A. & Honkapää, K., 2018, In : Journal of Cereal Science. 83, p. 130-138 9 p.

Research output: Contribution to journalArticleScientificpeer-review

4 Citations (Scopus)

Enhanced triacylglycerol production with genetically modified Trichosporon oleaginosus

Koivuranta, K., Castillo, S., Jouhten, P., Ruohonen, L., Penttilä, M. & Wiebe, M. G., 21 Jun 2018, In : Frontiers in Microbiology. 9, JUN, 1337.

Research output: Contribution to journalArticleScientificpeer-review

5 Citations (Scopus)

Enhanced wort fermentation with de novo lager hybrids adapted to high-ethanol environments

Krogerus, K., Holmström, S. & Gibson, B., 1 Feb 2018, In : Applied and Environmental Microbiology. 84, 4, e02302-17.

Research output: Contribution to journalArticleScientificpeer-review

14 Citations (Scopus)

Euglena gracilis growth and cell composition under different temperature, light and trophic conditions

Wang, Y., Seppänen-Laakso, T., Rischer, H. & Wiebe, M. G., 1 Apr 2018, In : PLoS ONE. 13, 4, e0195329.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
6 Citations (Scopus)
Open Access

Mediator-free enzymatic electrosynthesis of formate by the Methanococcus maripaludis heterodisulfide reductase supercomplex

Lienemann, M., Deutzmann, J. S., Milton, R. D., Sahin, M. & Spormann, A. M., 1 Apr 2018, In : Bioresource Technology. 254, p. 278-283 6 p.

Research output: Contribution to journalArticleScientificpeer-review

23 Citations (Scopus)

Microalgal CO2 capture at extreme pH values

Piiparinen, J., Barth, D., Eriksen, N. T., Teir, S., Spilling, K. & Wiebe, M. G., 1 Jun 2018, In : Algal Research. 32, p. 321-328 8 p.

Research output: Contribution to journalArticleScientificpeer-review

6 Citations (Scopus)

Microbial Protein Produced from Brown Seaweed and Spruce Wood as a Feed Ingredient

Sharma, S., Hansen, L. D., Hansen, J. O., Mydland, L. T., Horn, S. J., Øverland, M., Eijsink, V. G. H. & Vuoristo, K. S., 8 Aug 2018, In : Journal of Agricultural and Food Chemistry. 66, 31, p. 8328-8335 8 p.

Research output: Contribution to journalArticleScientificpeer-review

13 Citations (Scopus)

Overexpressed maltose transporters in laboratory and lager yeasts: Localization and competition with endogenous transporters

Vidgren, V. & Londesborough, J., 1 Oct 2018, In : Yeast. 35, 10, p. 567-576 10 p.

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

Soxhlet extraction of mucic acid from fungal biomass

Thomas, D. A., Virtanen, T. & Wiebe, M. G., 2018, In : Separation Science and Technology. 53, 6, p. 903-909 7 p.

Research output: Contribution to journalArticleScientificpeer-review

Towards patterned bioelectronics: facilitated immobilization of exoelectrogenic Escherichia coli with heterologous pili

Lienemann, M., TerAvest, M. A., Pitkänen, J. P., Stuns, I., Penttilä, M., Ajo-Franklin, C. M. & Jäntti, J., 1 Nov 2018, In : Microbial Biotechnology. 11, 6, p. 1184-1194 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

Traditional Norwegian Kveik Are a Genetically Distinct Group of Domesticated Saccharomyces cerevisiae Brewing Yeasts

Preiss, R., Tyrawa, C., Krogerus, K., Garshol, L. M. & Van Der Merwe, G., 12 Sep 2018, In : Frontiers in Microbiology. 9, SEP, 2137.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
10 Citations (Scopus)

Trans-regulation and localization of orthologous maltose transporters in the interspecies lager yeast hybrid

Vidgren, V. & Gibson, B., 1 Sep 2018, In : FEMS Yeast Research. 18, 6, 14 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
2 Citations (Scopus)
2017

A design-build-test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models

Miskovic, L., Alff-Tuomala, S., Soh, K. C., Barth, D., Salusjärvi, L., Pitkänen, J-P., Ruohonen, L., Penttilä, M. & Hatzimanikatis, V., 2017, In : Biotechnology for Biofuels. 10, 1, 166.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
14 Citations (Scopus)

Bittejä ja biomassaa: Tiekartta digitalisaation vauhdittamaan biotalouteen

Leinonen, A. (ed.), Åkerman, M. (ed.), Kruus, K. (ed.), Asikainen, A. (ed.), Muhonen, T. (ed.), Kohl, J. (ed.), Ala-Ilomäki, J., Arvas, M., Backman, J., Hantula, J., Holmala, K., Häme, T., Kangas, A., Isto, P., Lantto, R., Nieminen, K., Pastell, M., Nordlund, E., Peltola, R., Pesonen, L. & 8 others, Pitkänen, J-P., Piri, T., Pusenius, J., Seisto, A., Suomi, P., Utriainen, M., Viiri, H. & Väätäinen, K., 2017, VTT Technical Research Centre of Finland. 103 p. (VTT Visions; No. 11).

Research output: Book/ReportReport

Open Access

Development of a low-cost cellulase production process using Trichoderma reesei for Brazilian biorefineries

Ellilä, S., Fonseca, L., Uchima, C., Cota, J., Goldman, G. H., Saloheimo, M., Sacon, V. & Siika-Aho, M., 2017, In : Biotechnology for Biofuels. 10, 1, p. 30

Research output: Contribution to journalArticleScientificpeer-review

Open Access
50 Citations (Scopus)

Enhancing fungal production of galactaric acid

Barth, D. & Wiebe, M. G., 1 May 2017, In : Applied Microbiology and Biotechnology. 101, 10, p. 4033-4040 8 p.

Research output: Contribution to journalArticleScientificpeer-review

8 Citations (Scopus)

Evolutionary engineering in chemostat cultures for improved maltotriose fermentation kinetics in saccharomyces pastorianus lager brewing yeast

Brickwedde, A., van den Broek, M., Geertman, J-MA., Magalhães, F., Kuijpers, N. G. A., Gibson, B., Pronk, J. T. & Daran, J-MG., 8 Sep 2017, In : Frontiers in Microbiology. 8, SEP, p. 1690 1690.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
16 Citations (Scopus)