Research Output

2013

Capillary electrophoresis for monitoring of carboxylic, phenolic and amino acids in bioprocesses: Dissertation

Turkia, H., 2013, Espoo: VTT Technical Research Centre of Finland. 146 p.

Research output: ThesisDissertationCollection of Articles

Open Access

Capillary electrophoresis for the monitoring of phenolic compounds in bioprocesses

Turkia, H., Sirén, H., Penttilä, M. & Pitkänen, J. P., 22 Feb 2013, In : Journal of Chromatography A. 1278, p. 175-180

Research output: Contribution to journalArticle

12 Citations (Scopus)

Characterization of the Ashbya gossypii secreted N-glycome and genomic insights into its N-glycosylation pathway

Aguiar, T. Q., Maaheimo, H., Heiskanen, A., Wiebe, M. G., Penttilä, M. & Domingues, L., 1 Jan 2013, In : Carbohydrate Research. 381, p. 19-27

Research output: Contribution to journalArticle

9 Citations (Scopus)

Comparative physiology and fermentation performance of Saaz and Frohberg lager yeast strains and the parental species Saccharomyces eubayanus

Gibson, B., Storgårds, E., Krogerus, K. & Vidgren, V., 2013, In : Yeast. 30, 7, p. 255-266 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
53 Citations (Scopus)

Effect of charged-based engineering on the interfacial assembly of Class II hydrophobin HFBI

Paananen, A., Lienemann, M. & Linder, M., 2013.

Research output: Contribution to conferenceConference AbstractScientific

Ethanol from Nordic wood raw material by simplified alkaline soda cooking pre-treatment

von Schenck, A., Berglin, N. & Uusitalo, J., 2013, In : Applied Energy. 102, p. 229-240

Research output: Contribution to journalArticle

28 Citations (Scopus)

Glycolic acid production in the engineered yeasts Saccharomyces cerevisiae and Kluyveromyces lactis

Koivistoinen, O. M., Kuivanen, J., Barth, D., Turkia, H., Pitkänen, J. P., Penttilä, M. & Richard, P., 23 Sep 2013, In : Microbial Cell Factories. 12, 1, 82.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
58 Citations (Scopus)

Identification and characterization of enzymes involved in the oxidative D-galacturonic acid pathway

Koivula, A., Andberg, M., Maaheimo, H., Boer, H., Mojzita, D., Wiebe, M., Richard, P., Parkkinen, T., Taberman, H., Rouvinen, J. & Penttilä, M., 2013.

Research output: Contribution to conferenceConference AbstractScientific

Influence of valine and other amino acids on total diacetyl and 2,3-pentanedione levels during fermentation of brewer's wort

Krogerus, K. & Gibson, B., 2013, In : Applied Microbiology and Biotechnology. 97, 15, p. 6919-6930 11 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
41 Citations (Scopus)

Low pH d-xylonate production with Pichia kudriavzevii

Toivari, M., Vehkomäki, M. L., Nygård, Y., Penttilä, M., Ruohonen, L. & Wiebe, M. G., 1 Jan 2013, In : Bioresource Technology. 133, p. 555-562

Research output: Contribution to journalArticle

36 Citations (Scopus)

Mixotrophic continuous flow cultivation of Chlorella protothecoides for lipids

Wang, Y., Rischer, H., Eriksen, N. T. & Wiebe, M., 2013, In : Bioresource Technology. 144, p. 608-614 6 p.

Research output: Contribution to journalArticleScientificpeer-review

31 Citations (Scopus)

Online capillary electrophoresis for monitoring carboxylic acid production by yeast during bioreactor cultivations

Turkia, H., Holmström, S., Paasikallio, T., Sirén, H., Penttilä, M. & Pitkänen, J. P., 15 Oct 2013, In : Analytical Chemistry. 85, 20, p. 9705-9712

Research output: Contribution to journalArticle

15 Citations (Scopus)

Overexpression of NADH-dependent fumarate reductase improves d-xylose fermentation in recombinant Saccharomyces cerevisiae

Salusjärvi, L., Kaunisto, S., Holmström, S., Vehkomäki, M-L., Koivuranta, K., Pitkänen, J-P. & Ruohonen, L., 2013, In : Journal of industrial microbiology and biotechnology. 40, 12, p. 1383-1392 9 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Pilot-scale brewing using self-cloning bottom-fermenting yeast with high SSU1 expression

Ogata, T., Kobayashi, M. & Gibson, B., 2013, In : Journal of the Institute of Brewing. 119, 1-2, p. 17-22 5 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
4 Citations (Scopus)

Random and direct mutagenesis to enhance protein secretion in Ashbya gossypii

Ribeiro, O., Magalhães, F., Aguiar, T. Q., Wiebe, M. G., Penttilä, M. & Domingues, L., 1 Jan 2013, In : Bioengineered. 4, 5, p. 322-331

Research output: Contribution to journalArticle

Open Access
17 Citations (Scopus)

Solid-support immobilization of a "swing" fusion protein for enhanced glucose oxidase catalytic activity

Takatsuji, Y., Yamasaki, R., Iwanaga, A., Lienemann, M., Linder, M. & Haruyama, T., 2013, In : Colloids and Surfaces B: Biointerfaces. 112, p. 186 - 191

Research output: Contribution to journalArticle

22 Citations (Scopus)

Spruce bark biorefinery

Kemppainen, K., Niemelä, T., Inkinen, J., Uusitalo, J., Kaijaluoto, S., Sorsamäki, L., Aaltonen, O., Suurnäkki, A., Peltonen, S., Mikkonen, H., Grönberg, V., Kruus, K., Nakari-Setälä, T. & Siika-aho, M., 2013, Proceedings of the 21st European Biomass Conference. p. 540-543

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingsScientific

Structure-function relationships in hydrophobins: Probing the role of charged side chains

Lienemann, M., Gandier, J-A., Joensuu, J., Iwanaga, A., Takatsuji, Y., Haruyama, T., Master, E., Tenkanen, M. & Linder, M. B., 8 Jul 2013, In : Applied and Environmental Microbiology. 79, 18, p. 5533 - 5538

Research output: Contribution to journalArticleScientificpeer-review

13 Citations (Scopus)

The productivity of algae in mixotrophic conditions

Wiebe, M. & Wang, Y., 2013, Sustainable algal biomass products by cultivation in waste water flows. Arnold, M. (ed.). Espoo: VTT Technical Research Centre of Finland, p. 27-33 (VTT Technology; No. 147).

Research output: Chapter in Book/Report/Conference proceedingChapter or book articleProfessional

Open Access

Transcription of a-glucoside transport and metabolism genes in the hybrid brewing yeast Saccharomyces pastorianus with respect to gene provenance and fermentation temperature

Gibson, B., Londesborough, J., Rautio, J., Mattinen, L. & Vidgren, V., 2013, In : Journal of the Institute of Brewing. 119, 1-2, p. 23-31 8 p.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
8 Citations (Scopus)

Valiinin ja vapaan aminotypen vaikutus diasetyylin ja 2,3-pentaanidionin kokonaispitoisuuksiin käymisen aikana

Krogerus, K. & Gibson, B., 2013, In : Mallas ja Olut. 79, 2, p. 40-49 10 p.

Research output: Contribution to journalArticleProfessional

2012

Bioconversion of D-xylose to D-xylonate with Saccharomyces cerevisiae

Nygård, Y., Toivari, M., Ruohonen, L., Penttilä, M. & Wiebe, M., 2012.

Research output: Contribution to conferenceConference PosterScientific

Characterization of the Saccharomyces bayanus-type AGT1 transporter of lager yeast

Vidgren, V. & Londesborough, J., 2012, In : Journal of the Institute of Brewing. 118, 2, p. 148-151 3 p.

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)

Correlation of gene expression and protein production rate: A system wide study

Arvas, M., Pakula, T., Smit, B., Rautio, J., Koivistoinen, H., Jouhten, P., Lindfors, E., Wiebe, M., Penttilä, M. & Saloheimo, M., 2012, Abstracts from the 11th European Conference on Fungal Genetics. New Prairie Press, p. 244 PR8.52. (Fungal Genetics Reports; No. 6, Vol. 59).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Demonstration of laccase-based removal of lignin from wood and non-wood plant feedstocks

Gutiérrez, A., Rencoret, J., Cadena, E. M., Rico, A., Barth, D., del Rio, J. C. & Martinez, T. T., 2012, In : Bioresource Technology. 119, p. 114-122 8 p.

Research output: Contribution to journalArticleScientificpeer-review

89 Citations (Scopus)

D-Xylonate and xylitol as biorefinery products from hemicellulose

Toivari, M., Nygård, Y., Vehkomäki, M-L., Ruohonen, L., Penttilä, M. & Wiebe, M., 2012, NWBC 2012: The 4th Nordic Wood Biorefinery Conference. Espoo: VTT Technical Research Centre of Finland, p. 423-424 (VTT Technology, Vol. 53).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingsProfessional

Open Access
Open Access
21 Citations (Scopus)

Engineering filamentous fungi for conversion of d-galacturonic acid to L-galactonic acid

Kuivanen, J., Mojzita, D., Wang, Y., Hilditch, S., Penttilä, M., Richard, P. & Wiebe, M. G., 1 Dec 2012, In : Applied and Environmental Microbiology. 78, 24, p. 8676-8683

Research output: Contribution to journalArticle

Open Access
35 Citations (Scopus)

Enhanced fermentation performance in both normal and very high gravity wort with a yeast strain adapted to hyperosmotic conditions

Ekberg, J., Vidgren, V., Rautio, J., Londesborough, J. & Gibson, B., 2012.

Research output: Contribution to conferenceConference AbstractScientific

Erittäin vahvan vierteen käymisiin kehitetyn hiivan suorituskyvyn arviointi

Translated title of the contribution: Fermentation performance of yeast developed for very high gravity brewingEkberg, J. & Gibson, B., 2012, In : Mallas ja Olut. 1, p. 4-12 9 p.

Research output: Contribution to journalArticleProfessional

Ethanol production from wood via concentrated acid hydrolysis, chromatographic separation, and fermentation

Heinonen, J., Tamminen, A., Uusitalo, J. & Sainio, T., 2012, In : Journal of Chemical Technology and Biotechnology. 87, 5, p. 689-696 8 p.

Research output: Contribution to journalArticleScientificpeer-review

26 Citations (Scopus)

Hot water extraction and steam explosion as pretreatments for ethanol production from spruce bark

Kemppainen, K., Inkinen, J., Uusitalo, J., Nakari-Setälä, T. & Siika-aho, M., 2012, In : Bioresource Technology. 117, p. 131-139

Research output: Contribution to journalArticle

43 Citations (Scopus)

Lipid production in batch and fed-batch cultures of Rhodosporidium toruloides from 5 and 6 carbon carbohydrates

Wiebe, M. G., Koivuranta, K., Penttilä, M. & Ruohonen, L., 30 May 2012, In : BMC Biotechnology. 12, 26.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
66 Citations (Scopus)

Maltoosin ja maltotrioosin kuljetus- ja metaboliageenien transkription vertailu hybridi Sacchamoryces pastorianus -panimokannassa suhteessa geenien alkuperään

Vidgren, V., Londesborough, J., Rautio, J., Mattinen, L. & Gibson, B., 2012, In : Mallas ja Olut. 78, 3, p. 76-86 11 p.

Research output: Contribution to journalArticleProfessional

Metabolic engineering of Saccharomyces cerevisiae for bioconversion of d-xylose to d-xylonate

Toivari, M., Nygård, Y., Kumpula, E. P., Vehkomäki, M. L., Benčina, M., Valkonen, M., Maaheimo, H., Andberg, M., Koivula, A., Ruohonen, L., Penttilä, M. & Wiebe, M. G., 1 Jul 2012, In : Metabolic Engineering. 14, 4, p. 427-436

Research output: Contribution to journalArticle

Open Access
45 Citations (Scopus)

Microbial d-xylonate production

Toivari, M. H., Nygård, Y., Penttilä, M., Ruohonen, L. & Wiebe, M. G., 1 Oct 2012, In : Applied Microbiology and Biotechnology. 96, 1, p. 1-8

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
42 Citations (Scopus)

Monosaccharide production from lignocellulosic biomasses via concentrated acid hydrolysis

Heinonen, J., Tamminen, A., Uusitalo, J. & Sainio, T., 2012, NWBC 2012: The 4th Nordic Wood Biorefinery Conference. Niemelä, K. (ed.). Espoo: VTT Technical Research Centre of Finland, p. 273-274 (VTT Technology; No. 53).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingsProfessional

Open Access

Nutritional requirements and strain heterogeneity in Ashbya gossypii

Ribeiro, O., Domingues, L., Penttilä, M. & Wiebe, M. G., 1 Oct 2012, In : Journal of Basic Microbiology. 52, 5, p. 582-589

Research output: Contribution to journalArticle

9 Citations (Scopus)

Reed canary grass as a feedstock for 2nd generation bioethanol production

Kallioinen, A., Uusitalo, J., Pahkala, K., Kontturi, M., Viikari, L., von Weymarn, N. & Siika-aho, M., 2012, In : Bioresource Technology. 123, p. 669-672 3 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Self-assembly of class II hydrophobins on polar surfaces

Grunér, M. S., Szilvay, G., Berglin, M., Lienemann, M., Laaksonen, P. & Linder, M., 9 Feb 2012, In : Langmuir. 28, 9, p. 4293-4300

Research output: Contribution to journalArticle

20 Citations (Scopus)

Sugar acids: Building blocks for a bio-based future

Wiebe, M., 2012, Research highlights in industrial biomaterials. Espoo: VTT Technical Research Centre of Finland, p. 16-20 (VTT Research Highlights; No. 2).

Research output: Chapter in Book/Report/Conference proceedingChapter or book articleProfessional

Open Access

Sustainable biofuel: innovations in bioethanol production technologies (SusBioFuel)

Dyrset, N., Øyaas, K., John Hobley, T., Alftren, J., Hreggvidsson, G., Uusitalo, J., Schenck, A. V., Ochoa-Fernandez, E. & Einen, J., 2012, NWBC 2012: The 4th Nordic Wood Biorefinery Conference. Niemelä, K. (ed.). Espoo: VTT Technical Research Centre of Finland, p. 265-266 (VTT Technology; No. 53).

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingsProfessional

Open Access

Systems biology for studying the physiology of acid producing yeast

Oja, M., Jouhten, P., Rintala, E., Toivari, M., Wiebe, M., Ruohonen, L. & Penttilä, M., 2012.

Research output: Contribution to conferenceConference PosterScientific

The effects of pH oscillation on Lactobacillus rhamnosus batch cultivation

Wallenius, J., Barth, D. & Eerikäinen, T., 2012, In : Applied Microbiology and Biotechnology. 95, 5, p. 1265-1273 9 p.

Research output: Contribution to journalArticleScientificpeer-review

3 Citations (Scopus)
2011

125th Anniversary review: Yeast flocculation and sedimentation in brewing

Vidgren, V. & Londesborough, J., 2011, In : Journal of the Institute of Brewing. 117, 4, p. 475-487 13 p.

Research output: Contribution to journalArticle

40 Citations (Scopus)

125th Anniversary Review: Improvement of higher gravity brewery fermentation via wort enrichment and supplementation

Gibson, B., 2011, In : Journal of the Institute of Brewing. 117, 3, p. 268-284

Research output: Contribution to journalReview ArticleScientificpeer-review

Open Access
28 Citations (Scopus)

Bioconversion of d-xylose to d-xylonate with Kluyveromyces lactis

Nygård, Y., Toivari, M. H., Penttilä, M., Ruohonen, L. & Wiebe, M. G., 1 Jul 2011, In : Metabolic Engineering. 13, 4, p. 383-391

Research output: Contribution to journalArticle

30 Citations (Scopus)

Correlation of gene expression and protein production rate: a system wide study

Arvas, M., Pakula, T., Smit, B., Rautio, J., Koivistoinen, H., Jouhten, P., Lindfors, E., Wiebe, M., Penttilä, M. & Saloheimo, M., 20 Dec 2011, In : BMC Genomics. 12, 616.

Research output: Contribution to journalArticleScientificpeer-review

Open Access
43 Citations (Scopus)

Correlation of gene expression and protein production rate: A system wide study

Arvas, M., Pakula, T., Smit, B., Rautio, J., Jouhten, P., Koivistoinen, H., Lindfors, E., Wiebe, M., Penttilä, M. & Saloheimo, M., 2011, 26th Fungal Genetics Conference at Asilomar March 15-20, 2011. Genetics Society of America, p. 120 (Fungal Genetics Reports; No. Supplement, Vol. 58).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Enzymatic hydrolysis and ethanol production of hot water extracted spruce bark

Nyman, K., Uusitalo, J., Inkinen, J., Siika-aho, M. & Nakari-Setälä, T., 2011.

Research output: Contribution to conferenceConference PosterScientific