Research Output

2011

Evaluation of ITS PCR and RFLP for differentiation and identification of brewing yeast and brewery 'wild' yeast contaminants

Pham, T., Wimalasena, T., Box, W. G., Koivuranta, K., Storgårds, E., Smart, K. A. & Gibson, B., 2011, In : Journal of the Institute of Brewing. 117, 4, p. 556-568

Research output: Contribution to journalArticleScientificpeer-review

Open Access
32 Citations (Scopus)

Hydrophobin fusions for high level intracellular protein production and purification in plants and filamentous fungi

Joensuu, J., Conley, A., Mustalahti, E., Lienemann, M., Linder, M., Menassa, R. & Saloheimo, M., 2011, Conference on Recombinant Protein Production 6: Abstracts.

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Identification of regulatory elements in the AGT1 promoter of ale and lager strains of brewer's yeast

Vidgren, V., Kankainen, M., Londesborough, J. & Ruohonen, L., 2011, In : Yeast. 28, 8, p. 579-594 16 p.

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)

Influence of growth temperature on the production of antibody Fab fragments in different microbes: A host comparative analysis

Dragosits, M., Frascotti, G., Bernard-Granger, L., Vázquez, F., Giuliani, M., Baumann, K., Rodríguez-Carmona, E., Tokkanen, J., Parrilli, E., Wiebe, M. G., Kunert, R., Maurer, M., Gasser, B., Sauer, M., Branduardi, P., Pakula, T., Saloheimo, M., Penttilä, M., Ferrer, P., Luisa Tutino, M. & 3 others, Villaverde, A., Porro, D. & Mattanovich, D., 1 Jan 2011, In : Biotechnology Progress. 27, 1, p. 38-46

Research output: Contribution to journalArticleScientificpeer-review

30 Citations (Scopus)

Metabolism of Saccharomyces cerevisiae in sudden oxygen depletion

Jouhten, P., Rintala, E., Wiebe, M., Maaheimo, H., Ruohonen, L. & Penttilä, M., 2011, 12the International Conference on Systems Biology 2011 (ICSB 2011). Curran Associates Inc.

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingsScientific

Miniature Fermentation Method

Speers, A., Cook, D., Eck, S. E., Gibson, B., Joy, R., MacCleod, A., Panteloglou, A., Voetz, M., Walker, S. & Powell, C., 2011, In : Journal of the American Society of Brewing Chemists. 69, 4, p. 281-287

Research output: Contribution to journalArticleScientificpeer-review

2 Citations (Scopus)

On-line high performance liquid chromatography measurements of extracellular metabolites in an aerobic batch yeast (Saccharomyces cerevisiae) culture

Tohmola, N., Ahtinen, J., Pitkänen, J-P., Parviainen, V., Joenväärä, S., Hautamäki, M., Lindroos, P., Mäkinen, J. & Renkonen, R., 2011, In : Biotechnology and Bioprocess Engineering. 16, 2, p. 264-272 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Optimizing hydrophobin fusion technology for protein expression and purification in plants and plant cell culture

Joensuu, J., Ritala, A., Lienemann, M., Conley, A., Saverianfar, R., Pereira, E., Yan, R., Gutierrez, S., Linder, M. & Menassa, R., 2011, Plant Based Vaccines and Antibodies: Abstracts.

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Organosolv pretreatment of lignocellulosics for bioethanol production

Liitiä, T., Mikkonen, H., Paananen, M., Uusitalo, J., Tamminen, T. & Colodette, J. L., 2011.

Research output: Contribution to conferenceConference articleScientificpeer-review

Oxido-reductive metabolism of L-arabinose and D-galactose in filamentous fungi: Metabolic crosstalk versus specific enzymes

Mojzita, D., Koivistoinen, O., Vuoristo, K., Ruohonen, L., Penttilä, M. & Richard, P., 2011, 26th Fungal Genetics Conference: Program and Abstracts. 328. (Fungal Genetics Reports; No. Supplement, Vol. 58).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Production of terpenes with Aspergillus nidulans

Vuoristo, K., Bromann, K., Toivari, M., Ruohonen, L. & Nakari-Setälä, T., 2011, 26th Fungal Genetics Conference: Programan and Abstracts. 349. (Fungal Genetics Reports; No. Supplement, Vol. 58).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Step-wise adaptive evolution of a brewer's yeast strain for both OSMO- and ethanol tolerance

Gibson, B. & Londesborough, J., 2011, 33rd International Congress of the European Brewery Convention 2011 (EBC): Glasgow, UK, 22-26 May 2011. Curran Associates Inc., p. 247 L31

Research output: Chapter in Book/Report/Conference proceedingConference article in proceedingsScientific

Open Access
21 Citations (Scopus)

VTT:n hiivapankin vahvavierrekäymiseen soveltuvat lager-hiivakannat

Gibson, B., Storgårds, E., Wilpola, A. & Londesborough, J., 2011, In : Mallas ja Olut. 2011, 2, p. 60-67

Research output: Contribution to journalArticleProfessional

2010

A role for the COMPASS complex as determinant of brewing yeast fermentation performance

Gibson, B., Rautio, J., Huuskonen, A., Vuokko, H. & Londesborough, J., 2010.

Research output: Contribution to conferenceConference articleScientific

Open Access
14 Citations (Scopus)

Bioprosessien automaattinen monitorointi

Pitkänen, J-P., 2010, In : Mallas ja Olut. 2 , p. 58-61

Research output: Contribution to journalArticle

Can evolutionary engineering for osmotolerance improve very high gravity fermentation performance?

Gibson, B. & Londesborough, J., 2010.

Research output: Contribution to conferenceOther conference contributionScientific

Capillary electrophoresis for the monitoring of carboxylic acid production by Gluconobacter oxydans

Turkia, H., Sirén, H., Pitkänen, J-P., Wiebe, M. & Penttilä, M., 26 Feb 2010, In : Journal of Chromatography A. 1217, 9, p. 1537-1542

Research output: Contribution to journalArticle

25 Citations (Scopus)

Changes in oxygen provision affect the Saccharomyces cerevisiae lipidome

Oja, M., Seppänen-Laakso, T., Wiebe, M., Oresic, M. & Penttilä, M., 2010.

Research output: Contribution to conferenceConference articleScientific

Open Access

Current algae projects at VTT Espoo

Wiebe, M., Enss, D., Wang, Y. & Ruohonen, L., 2010, p. 10-11.

Research output: Contribution to conferenceConference articleScientific

Design and characterisation of xylonate producing yeast

Toivari, M., Nygård, Y., Vehkomäki, M-L., Penttilä, M., Ruohonen, L. & Wiebe, M., 2010.

Research output: Contribution to conferenceConference articleScientific

Detecting novel genes with sparse arrays

Arvas, M., Haiminen, N., Smit, B., Rautio, J., Vitikainen, M., Wiebe, M., Martinez, D., Chee, C., Kunkel, J., Sanchez, C., Nelson, M. A., Pakula, T., Saloheimo, M., Penttilä, M. & Kivioja, T., 1 Nov 2010, In : Gene. 467, 1-2, p. 41-51

Research output: Contribution to journalArticleScientificpeer-review

9 Citations (Scopus)

Expression of Trichoderma reesei cellulases CBHI and EGI in Ashbya gossypii

Ribeiro, O., Wiebe, M., Ilmén, M., Domingues, L. & Penttilä, M., 1 Jul 2010, In : Applied Microbiology and Biotechnology. 87, 4, p. 1437-1446

Research output: Contribution to journalArticle

27 Citations (Scopus)

Factors influencing higher alcohol and ester production during brewery fermentation

Gibson, B., Storgårds, E. & Londesborough, J., 2010.

Research output: Contribution to conferenceConference articleScientific

HEPA liquid filter in Silicon-on-Insulator

Kolari, K., Hokkanen, A., Paasikallio, T. & Pitkänen, J-P., 2010.

Research output: Contribution to conferenceConference articleScientific

Hydrophobin fusions for high-level transient protein expression and purification in Nicotiana benthamiana

Joensuu, J., Conley, A. J., Lienemann, M., Brandle, J. E., Linder, M. & Menassa, R., Feb 2010, In : Plant Physiology. 152, p. 622 - 633

Research output: Contribution to journalArticleScientificpeer-review

113 Citations (Scopus)

Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains

Canelas, A. B., Harrison, N., Fazio, A., Zhang, J., Pitkänen, J. P., Van Den Brink, J., Bakker, B. M., Bogner, L., Bouwman, J., Castrillo, J. I., Cankorur, A., Chumnanpuen, P., Daran-Lapujade, P., Dikicioglu, D., Van Eunen, K., Ewald, J. C., Heijnen, J. J., Kirdar, B., Mattila, I., Mensonides, F. I. C. & 15 others, Niebel, A., Penttilä, M., Pronk, J. T., Reuss, M., Salusjärvi, L., Sauer, U., Sherman, D., Siemann-Herzberg, M., Westerhoff, H., De Winde, J., Petranovic, D., Oliver, S. G., Workman, C. T., Zamboni, N. & Nielsen, J., 1 Dec 2010, In : Nature Communications. 1, 9, 145.

Research output: Contribution to journalArticleScientificpeer-review

71 Citations (Scopus)

Liberation of cellulose from the lignin cage: A catalytic pretreatment method for the production of cellulosic ethanol

Hakola, M., Kallioinen, A., Kemell, M., Lahtinen, P., Lankinen, E., Leskelä, M., Repo, T., Riekkola, T., Siika-aho, M., Uusitalo, J., Vuorela, S. & von Weymarn, N., 2010, In : ChemSusChem. 3, 10, p. 1142-1145 4 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)
Open Access
1 Citation (Scopus)

Mechanisms of protein adhesion on surface films of hydrophobin

Wang, Z., Lienemann, M., Qiau, M. & Linder, M., 3 May 2010, In : Langmuir. 26, 11, p. 8491 - 8496

Research output: Contribution to journalArticle

60 Citations (Scopus)
50 Citations (Scopus)

Miniature fermentation method

Speers, A., Bendiak, D., Caudill, J., Cook, D., Eck, S. E., Fernandez, B., Gibson, B., MacCleod, A., Monroe, J., Parker, N., Porter, A., Schuba, R., Walker, S., White, L., Voetz, M. & Powell, C., 2010, In : Journal of the American Society of Brewing Chemists. 68, 4, p. 231-237 7 p.

Research output: Contribution to journalArticleScientificpeer-review

4 Citations (Scopus)

Multivariate analysis of dynamic gene expression data from yeast fermentation

Eerikäinen, T., Huuskonen, A., Vuokko, H., Vidgren, V., Londesborough, J. & Rautio, J., 2010, In : Journal of Biotechnology. 150, Supplement, p. 521 [P-S.27].

Research output: Contribution to journalOther journal contribution

Need for speed: tools for protein expression and purification of plants

Joensuu, J., Conley, A., Lienemann, M., Linder, M. & Menassa, R., 2010, Annual Meeting COST Action FA0804 Molecular Farming: Abstracts. 30

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Panimohiivan nimi - miksi se on niin hankalaa?

Storgårds, E., Vidgren, V. & Londesborough, J., 2010, In : Mallas ja Olut. 2 , p. 50-54

Research output: Contribution to journalArticle

Production of precursor chemicals with yeast and filamentous fungal biocatalysts

Wiebe, M., Toivari, M., Ruohonen, L. & Penttilä, M., 2010.

Research output: Contribution to conferenceConference articleScientific

Protein analysis by 31P NMR spectroscopy in ionic liquid: Quantitative determination of enzymatically created cross-links

Monogioudi, E., Permi, P., Filpponen, I., Lienemann, M., Li, B., Argyropoulos, D., Buchert, J. & Mattinen, M-L., 21 Jan 2010, In : Journal of Agricultural and Food Chemistry. 59, 4, p. 1352-1362

Research output: Contribution to journalArticle

7 Citations (Scopus)

Saccharomyces cerevisiae engineered to produce D-xylonate

Toivari, M., Ruohonen, L., Richard, P., Penttilä, M. & Wiebe, M., 2010.

Research output: Contribution to conferenceConference articleScientific

Saccharomyces cerevisiae engineered to produce D-xylonate

Toivari, M. H., Ruohonen, L., Richard, P., Penttilä, M. & Wiebe, M. G., 1 Oct 2010, In : Applied Microbiology and Biotechnology. 88, 3, p. 751-760

Research output: Contribution to journalArticle

38 Citations (Scopus)

Selection from industrial lager yeast strains of variants with improved fermentation performance in very-high-gravity worts

Huuskonen, A., Markkula, T., Vidgren, V., Lima, L., Mulder, L., Geurts, W., Walsh, M. & Londesborough, J., 2010, In : Applied and Environmental Microbiology. 76, 5, p. 1563-1573 11 p.

Research output: Contribution to journalArticle

Open Access
35 Citations (Scopus)

The temperature dependence of maltose transport in ale and lager strains of brewer's yeast

Vidgren, V., Multanen, J-P., Ruohonen, L. & Londesborough, J., 2010, In : FEMS Yeast Research. 10, 4, p. 402-411 10 p.

Research output: Contribution to journalArticle

Open Access
32 Citations (Scopus)

The 'true' l-xylulose reductase of filamentous fungi identified in Aspergillus niger

Mojzita, D., Vuoristo, K., Koivistoinen, O. M., Penttilä, M. & Richard, P., 1 Aug 2010, In : FEBS Letters. 584, 16, p. 3540-3544

Research output: Contribution to journalArticleScientificpeer-review

22 Citations (Scopus)

Tobacco hairy root cultures as production host for the human antibody M12

Häkkinen, S. T., Raven, N., Paasikallio, T., Pitkänen, J-P., Oksman-Caldentey, K-M., Schillberg, S. & Ritala, A., 2010.

Research output: Contribution to conferenceConference articleScientific

Transcriptome and proteome analysis of an antibody Fab fragment producing Trichoderma reesei strain and its parental strain at different cultivation temperatures

Pakula, T., Bernard-Granger, L., Toikkanen, J., Oja, M., Wiebe, M., Saloheimo, M. & Penttilä, M., 2010.

Research output: Contribution to conferenceConference PosterScientific

Understanding and managing yeast physiology and performance during very high gravity fermentations

Gibson, B., Kronlöf, J. & Londesborough, J., 2010, In : Mallas ja Olut. 2 , p. 40-49

Research output: Contribution to journalArticleProfessional

2009

Characterisation of the wheat germ agglutinin binding to self-assembled monolayers of neoglycoconjugates by AFM and SPR

Lienemann, M., Paananen, A., Boer, H., de la Fuente, J. M., García, I., Penadés, S. & Koivula, A., 24 Feb 2009, In : Glycobiology. 19, 6, p. 633 - 643

Research output: Contribution to journalArticleScientificpeer-review

20 Citations (Scopus)

Chemostats: Versatile tools for studying microbial physiology and evolution

Eriksen, N. T. & Wiebe, M., 2009, In : G.I.T. Laboratory Journal Europe. 1, p. 6-8 3 p.

Research output: Contribution to journalArticle

Concordant gene regulation related to perturbations of three GDP-mannose-related genes

Törmä, A., Pitkänen, J-P., Huopaniemi, L., Mattila, P. & Renkonen, R., 2009, In : FEMS Yeast Research. 9, 1, p. 63-72 10 p.

Research output: Contribution to journalArticle

Open Access