Research output per year
Research output per year
- 50 results
Search results
-
2025
Biological contaminants analysis in microalgae culture by UV–vis spectroscopy and machine learning
Paiva, E. M., Hyttinen, E., Dönsberg, T. & Barth, D., 5 Apr 2025, In: Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy. 330, 125690.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile25 Downloads (Pure) -
CFD modeling of CO2 fixation by microalgae cultivated in a lab scale photobioreactor
Ojaniemi, U., Tamminen, A., Syrjänen, J. & Barth, D., 1 Jan 2025, In: Bioresource Technology. 415, 131715.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)76 Downloads (Pure) -
Discovery of Cortinarius O-methyltransferases for the heterologous production of dermolutein and physcion
Jetha, P., Mojzita, D., Maiorova, N., de Ruijter, J. C., Maaheimo, H., Hilditch, S., Peddinti, G., Castillo, S., Toivari, M., Penttilä, M. & Molnár, I., 2025, In: Biotechnology for Biofuels and Bioproducts. 18, 1, 25.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile1 Citation (Scopus)8 Downloads (Pure) -
2024
Effective Inclusion of Electronic Polarization Improves the Description of Electrostatic Interactions: The prosECCo75 Biomolecular Force Field
Nencini, R., Tempra, C., Biriukov, D., Riopedre-Fernandez, M., Cruces Chamorro, V., Polák, J., Mason, P. E., Ondo, D., Heyda, J., Ollila, O. H. S., Jungwirth, P., Javanainen, M. & Martinez-Seara, H., 10 Sept 2024, In: Journal of Chemical Theory and Computation. 20, 17, p. 7546-7559 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access13 Citations (Scopus) -
Evaluating Polarizable Biomembrane Simulations against Experiments
Antila, H. S., Dixit, S., Kav, B., Madsen, J. J., Miettinen, M. S. & Ollila, S., 28 May 2024, In: Journal of Chemical Theory and Computation. 20, 10, p. 4325-4337Research output: Contribution to journal › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
Extents of reaction as supplementary constraints for Gibbs energy minimization
Koukkari, P. & Blomberg, P., 5 Aug 2024, In: Chemical Engineering Science. 295, 8 p., 120112.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access2 Citations (Scopus) -
Highly parallelized laboratory evolution of wine yeasts for enhanced metabolic phenotypes
Ghiaci, P., Jouhten, P., Martyushenko, N., Roca-Mesa, H., Vázquez, J., Konstantinidis, D., Stenberg, S., Andrejev, S., Grkovska, K., Mas, A., Beltran, G., Almaas, E., Patil, K. R. & Warringer, J., 3 Oct 2024, In: Molecular Systems Biology. 20, 10, p. 1109-1133 25 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access2 Citations (Scopus) -
Insights into the action of phylogenetically diverse microbial expansins on the structure of cellulose microfibrils
Haddad Momeni, M., Zitting, A., Jäämuru, V., Turunen, R., Penttilä, P., Buchko, G. W., Hiltunen, S., Maiorova, N., Koivula, A., Sapkota, J., Marjamaa, K. & Master, E. R., Dec 2024, In: Biotechnology for Biofuels and Bioproducts. 17, 1, 56.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access5 Citations (Scopus) -
Overlay databank unlocks data-driven analyses of biomolecules for all
Kiirikki, A. M., Antila, H. S., Bort, L. S., Buslaev, P., Favela-Rosales, F., Ferreira, T. M., Fuchs, P. F. J., Garcia-Fandino, R., Gushchin, I., Kav, B., Kučerka, N., Kula, P., Kurki, M., Kuzmin, A., Lalitha, A., Lolicato, F., Madsen, J. J., Miettinen, M. S., Mingham, C. & Monticelli, L. & 9 others, , Dec 2024, In: Nature Communications. 15, 1, 1136.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile14 Citations (Scopus)9 Downloads (Pure) -
Probing the dynamic landscape of peptides in molecular assemblies by synergized NMR experiments and MD simulations
Nencini, R., Regnier, M. L. G., Backlund, S. M., Mantzari, E., Dunn, C. D. & Ollila, O. H. S., 13 Feb 2024, In: Communications Chemistry. 7, 1, 28.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)3 Downloads (Pure) -
Rapid Interpretation of Protein Backbone Rotation Dynamics Directly from Spin Relaxation Data
Nencini, R., Mantzari, E., Sandelin, A. E. & Ollila, S., 1 Oct 2024, In: Journal of Physical Chemistry Letters. 15, 40, p. 10204–10209 6 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
2023
CBL/CAP Is Essential for Mitochondria Respiration Complex I Assembly and Bioenergetics Efficiency in Muscle Cells
Aye, C. C., Hammond, D. E., Rodriguez-Cuenca, S., Doherty, M. K., Whitfield, P. D., Phelan, M. M., Yang, C., Perez-Perez, R., Li, X., Diaz-Ramos, A., Peddinti, G., Orešič, M., Vidal-Puig, A., Zorzano, A., Ugalde, C. & Mora, S., Feb 2023, In: International Journal of Molecular Sciences. 24, 4, 17 p., 3399.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts
Pettersen, J. P., Castillo, S., Jouhten, P. & Almaas, E., Dec 2023, In: BMC Bioinformatics. 24, 1, 19 p., 438.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access5 Citations (Scopus) -
Inducible Synthetic Growth Regulation Using the ClpXP Proteasome Enhances cis,cis-Muconic Acid and Glycolic Acid Yields in Saccharomyces cerevisiae
Kakko, N., Rantasalo, A., Koponen, T., Vidgren, V., Kannisto, M., Maiorova, N., Nygren, H., Mojzita, D., Penttilä, M. & Jouhten, P., 21 Apr 2023, In: ACS Synthetic Biology. 12, 4, p. 1021-1033Research output: Contribution to journal › Article › Scientific › peer-review
Open Access2 Citations (Scopus) -
Oxidative treatment and nanofibrillation softwood kraft fibres with lytic polysaccharide monooxygenases from Trichoderma reesei and Podospora anserina
Marjamaa, K., Lahtinen, P., Arola, S., Maiorova, N., Nygren, H., Aro, N. & Koivula, A., Mar 2023, In: Industrial Crops and Products. 193, 116243.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile4 Citations (Scopus)102 Downloads (Pure) -
Production of bovine beta-lactoglobulin and hen egg ovalbumin by Trichoderma reesei using precision fermentation technology and testing of their techno-functional properties
Aro, N., Ercili-Cura, D., Andberg, M., Silventoinen, P., Lille, M., Hosia, W., Nordlund, E. & Landowski , C. P., Jan 2023, In: Food Research International. 163, 112131.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile38 Citations (Scopus)360 Downloads (Pure) -
Proof of Concept for Cell Culture-Based Coffee
Aisala, H., Kärkkäinen, E., Jokinen, I., Seppänen-Laakso, T. & Rischer, H., 16 Nov 2023, In: Journal of Agricultural and Food Chemistry. 71, 47, p. 18478-18488Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile11 Citations (Scopus)206 Downloads (Pure) -
Raspberry Ketone Accumulation in Nicotiana benthamiana and Saccharomyces cerevisiae by Expression of Fused Pathway Genes
Laurel, M., Mojzita, D., Seppänen-Laakso, T., Oksman-Caldentey, K.-M. & Rischer, H., 13 Sept 2023, In: Journal of Agricultural and Food Chemistry. 71, 36, p. 13391-13400Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile4 Citations (Scopus)33 Downloads (Pure) -
2022
Anti-Angiogenic Effect of Cantharellus cibarius Extracts, its Correlation with Lipoxygenase Inhibition, and Role of the Bioactives Therein
Marathe, S. J., Hamzi, W., Bashein, A. M., Deska, J., Seppänen-Laakso, T., Singhal, R. S. & Shamekh, S., 2022, In: Nutrition and Cancer. 74, 2, p. 724-734Research output: Contribution to journal › Article › Scientific › peer-review
7 Citations (Scopus) -
De novo transcriptome assembly of Conium maculatum L. to identify candidate genes for coniine biosynthesis
Peddinti, G., Hotti, H., Teeri, T. H. & Rischer, H., Dec 2022, In: Scientific Reports. 12, 1, 15 p., 17562.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access2 Citations (Scopus) -
Fractionation of Oil from Black Soldier Fly Larvae (Hermetia illucens)
Bogevik, A. S., Seppänen-Laakso, T., Samuelsen, T. A. & Thoresen, L., May 2022, In: European Journal of Lipid Science and Technology. 124, 5, 6 p., 2100252.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access4 Citations (Scopus) -
Operation of a TCA cycle subnetwork in the mammalian nucleus
Kafkia, E., Andres-Pons, A., Ganter, K., Seiler, M., Smith, T. S., Andrejeva, A., Jouhten, P., Pereira, F., Franco, C., Kuroshchenkova, A., Leone, S., Sawarkar, R., Boston, R., Thaventhiran, J., Zaugg, J. B., Lilley, K. S., Lancrin, C., Beck, M. & Patil, K. R., 2 Sept 2022, In: Science advances. 8, 35, eabq5206.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access37 Citations (Scopus) -
Oxidative modification of cellulosic fibres by lytic polysaccharide monooxygenase AA9A from Trichoderma reesei
Marjamaa, K., Rahikainen, J., Karjalainen, M., Maiorova, N., Holopainen-mantila, U., Molinier, M., Aro, N., Nygren, H., Mikkelson, A., Koivula, A. & Kruus, K., Jul 2022, In: Cellulose. 29, 11, p. 6021-6038 18 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile9 Citations (Scopus)92 Downloads (Pure) -
PHB production from cellobiose with Saccharomyces cerevisiae
Ylinen, A., De Ruijter, J. C., Jouhten, P. & Penttilä, M., 21 Jun 2022, In: Microbial Cell Factories. 21, 1, 124.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile9 Citations (Scopus)73 Downloads (Pure) -
Predictive evolution of metabolic phenotypes using model-designed environments
Jouhten, P., Konstantinidis, D., Pereira, F., Andrejev, S., Grkovska, K., Castillo, S., Ghiaci, P., Beltran, G., Almaas, E., Mas, A., Warringer, J., Gonzalez, R., Morales, P. & Patil, K. R., 1 Oct 2022, In: Molecular Systems Biology. 18, 10, e10980.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access12 Citations (Scopus) -
Production of biopolymer precursors beta-alanine and L-lactic acid from CO2 with metabolically versatile Rhodococcus opacus DSM 43205
Salusjärvi, L., Ojala, L., Peddinti, G., Lienemann, M., Jouhten, P., Pitkänen, J. P. & Toivari, M., 7 Oct 2022, In: Frontiers in Bioengineering and Biotechnology. 10, 14 p., 989481.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access8 Citations (Scopus) -
Strain design optimization using reinforcement learning
Sabzevari, M., Szedmak, S., Penttilä, M., Jouhten, P. & Rousu, J., Jun 2022, In: PLoS Computational Biology. 18, 6, e1010177.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access20 Citations (Scopus) -
Use of ambr®250 to assess mucic acid production in fed-batch cultures of a marine Trichoderma sp. D-221704
Tamminen, A., Turunen, R., Barth, D., Vidgren, V. & Wiebe, M. G., 2022, In: AMB Express. 12, 90.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)53 Downloads (Pure) -
2021
Adaptive laboratory evolution of microbial co-cultures for improved metabolite secretion
Konstantinidis, D., Pereira, F., Geissen, E. M., Grkovska, K., Kafkia, E., Jouhten, P., Kim, Y., Devendran, S., Zimmermann, M. & Patil, K. R., 9 Aug 2021, In: Molecular Systems Biology. 17, 8, 20 p., e10189.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile31 Citations (Scopus)103 Downloads (Pure) -
Allostatic hypermetabolic response in PGC1α/β heterozygote mouse despite mitochondrial defects
Rodriguez-Cuenca, S., Lelliot, C. J., Campbell, M., Peddinti, G., Martinez-Uña, M., Ingvorsen, C., Dias, A. R., Relat, J., Mora, S., Hyötyläinen, T., Zorzano, A., Orešič, M., Bjursell, M., Bohlooly-Y, M., Lindén, D. & Vidal-Puig, A., Sept 2021, In: FASEB Journal. 35, 9, 15 p., e21752.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access3 Citations (Scopus) -
Characterizing the Quality of Insight by Interactions: A Case Study
He, C., Micallef, L., He, L., Peddinti, G., Aittokallio, T. & Jacucci, G., Aug 2021, In: IEEE Transactions on Visualization and Computer Graphics. 27, 8, p. 3410-3424 15 p.Research output: Contribution to journal › Article › Scientific › peer-review
10 Citations (Scopus) -
Comparison of low energy and high energy electron beam treatments on sensory and chemical properties of seeds
Aisala, H., Nygren, H., Seppänen-laakso, T., Heiniö, R.-L., Kießling, M., Aganovic, K., Waser, A., Kotilainen, H. & Ritala, A., 1 Oct 2021, In: Food Research International. 148, 110575.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile12 Citations (Scopus)128 Downloads (Pure) -
Contrasting Dihydronaphthoquinone Patterns in Closely Related Drosera (Sundew) Species Enable Taxonomic Distinction and Identification
Schlauer, J., Hartmeyer, S. R. H., Hartmeyer, I., Seppänen-laakso, T. & Rischer, H., 4 Aug 2021, In: Plants. 10, 8, 1601.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile3 Citations (Scopus)37 Downloads (Pure) -
Engineering of Saccharomyces cerevisiae for anthranilate and methyl anthranilate production
Kuivanen, J., Kannisto, M., Mojzita, D., Rischer, H., Toivari, M. & Jäntti, J., 3 Feb 2021, In: Microbial Cell Factories. 20, 1, 34.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile21 Citations (Scopus)81 Downloads (Pure) -
Lager Yeast Design Through Meiotic Segregation of a Saccharomyces cerevisiae × Saccharomyces eubayanus Hybrid
Krogerus, K., Magalhães, F., Castillo, S., Peddinti, G., Vidgren, V., De Chiara, M., Yue, J.-X., Liti, G. & Gibson, B., 16 Sept 2021, In: Frontiers in Fungal Biology. 2, 17 p., 733655.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access13 Citations (Scopus) -
Natural Antimicrobials from Cloudberry (Rubus chamaemorus) Seeds by Sanding and Hydrothermal Extraction
Puupponen-pimiä, R., Nohynek, L., Suvanto, J., Salminen, J.-P., Seppänen-laakso, T., Tähtiharju, J., Honkapää, K. & Oksman-caldentey, K.-M., 18 Jun 2021, In: ACS Food Science & Technology. 1, 5, p. 917-927Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile12 Citations (Scopus)118 Downloads (Pure) -
Production of Endotoxin-Free Microbial Biomass for Food Applications by Gas Fermentation of Gram-Positive H2-Oxidizing Bacteria
Nyyssölä, A., Ojala, L., Wuokko, M., Peddinti, G., Tamminen, A., Tsitko, I., Nordlund, E. & Lienemann, M., 16 Apr 2021, In: ACS Food Science & Technology. 1, 3, p. 470-479Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile24 Citations (Scopus)345 Downloads (Pure) -
SynBiopython: An open-source software library for Synthetic Biology
Yeoh, J. W., Swainston, N., Vegh, P., Zulkower, V., Carbonell, P., Holowko, M. B., Peddinti, G. & Poh, C. L., 2021, In: Synthetic Biology. 6, 1, ysab001.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access13 Citations (Scopus) -
2020
A DNA number system and its applications
Gopalacharyulu, P. V. & Raja Sekhar, G. P., 1 Jul 2020, In: International Journal of Computational Intelligence in Control. 12, 2, p. 133-142 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access -
An investigation on changes in composition and antioxidant potential of mature and immature summer truffle (Tuber aestivum)
Shah, N., Usvalampi, A., Chaudhary, S., Seppänen-Laakso, T., Marathe, S., Bankar, S., Singhal, R. & Shamekh, S., 1 Apr 2020, In: European Food Research and Technology. 246, p. 723-731Research output: Contribution to journal › Article › Scientific › peer-review
25 Citations (Scopus) -
Anti-angiogenic and anti-inflammatory activity of the summer truffle (Tuber aestivum Vittad.) extracts and a correlation with the chemical constituents identified therein
Marathe, S. J., Hamzi, W., Bashein, A. M., Deska, J., Seppänen-Laakso, T., Singhal, R. S. & Shamekh, S., Nov 2020, In: Food Research International. 137, 109699.Research output: Contribution to journal › Article › Scientific › peer-review
15 Citations (Scopus) -
Examining safety of biocolourants from fungal and plant sources-examples from Cortinarius and Tapinella, Salix and Tanacetum spp. and dyed woollen fabrics
Räisänen, R., Primetta, A., Nikunen, S., Honkalampi, U., Nygren, H., Pihlava, J. M., Berghe, I. V. & von Wright, A., 20 May 2020, In: Antibiotics. 9, 5, 266.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access20 Citations (Scopus) -
High throughput, small scale methods to characterise the growth of marine fungi
Tamminen, A., Happonen, P., Barth, D., Holmström, S. & Wiebe, M. G., Aug 2020, In: PLoS ONE. 15, 8, p. e0236822 e0236822.Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile5 Citations (Scopus)166 Downloads (Pure) -
Metabolite profiling and mechanisms of bioactivity of snake autolysate - A traditional Uzbek medicine
Akbarov, U. S., Pozharitskaya, O. N., Laakso, I., Seppänen-Laakso, T., Urakova, I. N., Vuorela, H., Makarov, V. G. & Shikov, A. N., 25 Mar 2020, In: Journal of Ethnopharmacology. 250, 112459.Research output: Contribution to journal › Article › Scientific › peer-review
2 Citations (Scopus) -
Plant cell cultures as food—aspects of sustainability and safety
Häkkinen, S. T., Nygren, H., Nohynek, L., Puupponen-Pimiä, R., Heiniö, R. L., Maiorova, N., Rischer, H. & Ritala, A., 1 Dec 2020, In: Plant Cell Reports. 39, 12, p. 1655–1668Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile33 Citations (Scopus)162 Downloads (Pure) -
Solar-Powered Carbon Fixation for Food and Feed Production Using Microorganisms—A Comparative Techno-Economic Analysis
Nappa, M., Lienemann, M., Tossi, C., Blomberg, P., Jäntti, J., Tittonen, I. J. & Penttilä, M., 29 Dec 2020, In: ACS Omega. 5, 51, p. 33242–33252Research output: Contribution to journal › Article › Scientific › peer-review
Open AccessFile18 Citations (Scopus)119 Downloads (Pure) -
2017
A design-build-test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models
Miskovic, L., Alff-Tuomala, S., Soh, K. C., Barth, D., Salusjärvi, L., Pitkänen, J.-P., Ruohonen, L., Penttilä, M. & Hatzimanikatis, V., 2017, In: Biotechnology for Biofuels. 10, 1, 166.Research output: Contribution to journal › Article › Scientific › peer-review
Open Access33 Citations (Scopus) -
2012
Demonstration of laccase-based removal of lignin from wood and non-wood plant feedstocks
Gutiérrez, A., Rencoret, J., Cadena, E. M., Rico, A., Barth, D., del Rio, J. C. & Martínez, Á. T., 2012, In: Bioresource Technology. 119, p. 114-122Research output: Contribution to journal › Article › Scientific › peer-review
130 Citations (Scopus)