Markku Saloheimo

  • Phone+358405760892
1987 …2018

Research output per year

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Research Output

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Conference abstract in proceedings
1988

The use of gene technology in the development of novel cellulolytic organisms

Knowles, J., Teeri, T., Penttilä, M., Saloheimo, M., Harkki, A. & Lehtovaara, P., 1988, 8th Int. Conf. Global Impacts of Applied Microbiology and Int. Conf. Applied Biology and Biotechnology. Hong Kong, 1 - 5 Aug. 1988 Abstract. 53

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

1996

Kinetics of Protein Secretion in Trichoderma Reesei

Pakula, T., Salonen, K., Uusitalo, J., Saloheimo, M., Aarts, R. J. & Penttilä, M., 1996, Abstracts from the 3rd ECFG: European Congress on Fungal Genetics. New Prairie Press, (Fungal Genetics Reports; No. 34, Vol. 43).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2001

Characterisation of the translation initiation factors of Trichoderma reesei

Huuskonen, A., Alatalo, E., Saloheimo, M., Penttilä, M. & van der Laan, J., 2001, Fungal Genetics Conference. (2001): XXI Fungal Genetics Conference Abstracts. 205. (Fungal Genetics Reports; No. Article 17, Vol. 48).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Characterisation of two components of the unfolded protein response pathway from the filamentous fungus Trichoderma reesei

Valkonen, M., Saloheimo, M., Ward, M. & Penttilä, M., 2001, Fungal Genetics Conference (2001): XXI Fungal Genetics Conference Abstracts. 138. (Fungal Genetics Reports; No. Article 17, Vol. 48).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Induction mechanism of the Trichoderma reesei and Aspergillus nidulans hac1/A genes involved in the unfolded protein response

Saloheimo, M., Valkonen, M., Ward, M. & Penttilä, M., 2001, Fungal Genetics Conference (2001): XXI Fungal Genetics Conference Abstracts. 382. (Fungal Genetics Reports; No. Article 17, Vol. 48).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2002

The unfolded protein response pathway in filamentous fungi

Saloheimo, M., Valkonen, M., Ward, M. & Penttilä, M., 2002, European Commission, 5th Framework Programme: Centre of Excellence in Molecular Biotechnology Meeting Protein Secretion and Glycosylation in Yeast and Filamentous Fungi. Palamarczyk, G. (ed.). p. 17

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2003

Cellular responses to secretion stress in Trichoderma reesei

Saloheimo, M., Pakula, T., Arvas, M., Valkonen, M. & Penttilä, M., 2003, 22nd Fungal Genetics Conference at Asilomar: Abstracts from the 2003 Fungal Genetics Conference at Asilomar. 422. (Fungal Genetics Reports; No. Article 18, Vol. 50).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Improvement of foreign protein production by constitutive UPR induction in Aspergillus niger var. awamori

Valkonen, M., Saloheimo, M., Ward, M. & Penttilä, M., 2003, 22nd Fungal Genetics Conference at Asilomar: Abstracts from the 2003 Fungal Genetics Conference at Asilomar. 420. (Fungal Genetics Reports; No. Article 18, Vol. 50).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Investigation of the pentose phosphate pathway in Trichoderma reesei: disruption of the phosphoglucose isomerase gene

Limon, C., Uusitalo, J., Pakula, T., Saloheimo, M. & Penttilä, M., 2003, 22nd Fungal Genetics Conference at Asilomar: Abstracts from the 2003 Fungal Genetics Conference at Asilomar. 30. (Fungal Genetics Reports; No. Article 18, Vol. 50).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Proteomics studies in Trichoderma reesei

Pakula, T., Saloheimo, M. & Penttilä, M., 2003, 22nd Fungal Genetics Conference at Asilomar: Abstracts from the 2003 Fungal Genetics Conference at Asilomar. 277. (Fungal Genetics Reports; No. Article 18, Vol. 50).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2004

Heterologous expression of T. reesei secretory protein in S. cerevisiae PMT mutants

Górka, W., Bakowska, R., Saloheimo, M., Penttilä, M., Palamarczyk, G. & Kruszewska, J. S., 2004, Poster Abstracts. p. 189 VIIIp-6

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Protein production in filamentous fungi: cellular responses and strain improvement

Penttilä, M., Arvas, M., Pakula, T., Rautio, J., Valkonen, M. & Saloheimo, M., 2004, Plenary Lecture Abstracst. p. 43 L-7

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Study of the Pgi deletion in Trichoderma reesei

Limon, C., Uusitalo, J., Saloheimo, M. & Penttilä, M., 2004, Posters Abstracts. VIIIp-36

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2005

Proteome analysis of cell responses to protein secretion in Trichoderma reesei

Penttilä, M., Pakula, T., Riipi, T., Koivistoinen, H., Lanthaler, K., Saloheimo, M., Valmu, L., Kalkkinen, N. & Robson, G., 2005, Fungal Genetics Conference (2005): XXII Fungal Genetics Conference Abstracts. (Fungal Genetics Reports; No. Article 11, Vol. 52).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2006

Community involved fungal genome annotation at the JGI-LANL

Xie, G., Berka, R. M., Henrissat, B., Saloheimo, M., Magnuson, J., de Leon, A., Cullen, D., Nelson, B., Arvas, M., Westerholm-Parvinen, A., Merino, S., Baker, S. E., Schmoll, M., Harris, P., Ward, M., Larrondo, L. F., Yao, J., Penttilä, M., Jackson, M., Misra, M. & 15 others, Goodstein, D., Thayer, N., Terry, A., Huang, W., Rash, S., Dehal, P., Putnam, N., Chapman, J., Robbertse, B., Kubicek, C. P., Rokhsar, D., Gilna, P., Brettin, T., Lucas, S. & Martinez, D. A., 2006, 8th European Conference on Fungal Genetics: Book of Abstracts. Druzhinina, I. S., Kopchinskiy, A. G. & Kubicek, C. P. (eds.). Vienna University of Technology, p. 21 IIo-2

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Comparison of protein coding gene content of yeast and other fungal genomes

Arvas, M., Kivioja, T., Mitchell, A., Saloheimo, M., Oliver, S. & Penttilä, M., 2006, International Specialised Symposium on Yeasts ISSY25: Systems Biology of Yeasts - from Models to Applications. Espoo: VTT Technical Research Centre of Finland, p. 57 P5. (VTT Symposium; No. 242).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Comparison of protein coding gene content of yeasts and filamentous fungi

Arvas, M., Kivioja, T., Mitchell, A., Saloheimo, M., Oliver, S. & Penttilä, M., 2006, 8th European Conference on Fungal Genetics : Book of Abstracts. Vienna University of Technology, 33

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Development of Trichoderma reesei transformation technology with the aid of an episomal vector system

Aro, N., Westerholm-Parvinen, A., Penttilä, M. & Saloheimo, M., 2006, 8th European Conference on Fungal Genetics. Vienna, Austria, 8-11 April 2006: Book of Abstracts. 254

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Heterologous expression of isotopically labelled Trichoderma reesei tyrosinase 2 in Pichia pastoris

Westerholm-Parvinen, A., Mattinen, M-L., Selinheimo, E. & Saloheimo, M., 2006, International Specialised Symposium on Yeasts ISSY25: Systems Biology of Yeasts - from Models to Applications. Espoo: VTT Technical Research Centre of Finland, p. 106 P53. (VTT Symposium; No. 242).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Imaging the last stages of protein secretion in the filamentous fungus Trichoderma reesei

Valkonen, M., Penttilä, M., Saloheimo, M. & Read, N., 2006, 8th European Conference on Fungal Genetics: Book of Abstracts. Druzhinina, I. S., Kopchinskiy, A. G. & Kubicek, C. P. (eds.). Vienna University of Technology, p. 299 VIIIp-6

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Monitoring of transcript regulation and protein production related stress responses in Pichia pastoris secreting Fab antibody fragments

Gasser, B., Maurer, M., Sauer, M., Saloheimo, M., Rautio, J., Penttilä, M. & Mattanovich, D., 2006, International Specialised Symposium on Yeasts ISSY25: Systems Biology of Yeasts - from Models to Applications. VTT Technical Research Centre of Finland, p. 105 P52. (VTT Symposium; No. 242).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
11 Citations (Scopus)

Production and characterization of a secreted C-terminally processed tyrosinase from the filamentous fungus Trichoderma reesei

Kruus, K., Selinheimo, E., Saloheimo, M., Ahola, E., Westerholm-Parvinen, A., Kalkkinen, N. & Buchert, J., 2006, 3rd European Meeting in Oxizymes: Abstract book. 23

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Proteome and transcriptome analysis of the cellular responses to production of the heterologous protein, Melanocarpus albomyces laccase, in the filamentous fungus Trichoderma reesei

Pakula, T., Rautio, J., Smit, B., Arvas, M., Saloheimo, M. & Penttilä, M., 2006, 8th European Conference on Fungal Genetics: Book of Abstracts. Druzhnina, I. S., Kopchinskiy, A. G. & Kubicek, C. P. (eds.). Vienna University of Technology, p. 290 VIIp-35

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Rapid gene expression analysis for evaluation of physiological state of micro-organisms

Rautio, J., Toivari, M., Smit, B., Bailey, M., Söderlund, H., Saloheimo, M. & Penttilä, M., 2006, International Specialised Symposium on Yeasts ISSY25: Systems Biology of Yeasts - from Models to Applications. Espoo: VTT Technical Research Centre of Finland, p. 58 P6. (VTT Symposium; No. 242).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Transcriptional analysis of Trichoderma reesei bioprocesses with the novel TRAC method

Rautio, J., Kataja, K., Satokari, R., Penttilä, M., Söderlund, H. & Saloheimo, M., 2006, 8th European Conference on Fungal Genetics. Druzhinina, I. S., Kopchisnkiy, A. G. & Kubicek, C. P. (eds.). Vienna University of Technology, p. 251 VIIo-2

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2007

Comparison of protein coding gene contents of fungal phyla Pezizomycotina and Saccharomycotina

Arvas, M., Kivioja, T., Mitchell, A., Saloheimo, M., Ussery, D., Penttilä, M. & Oliver, S., 2007, 3rd European Federation of Biotechnology Conference: Physiology of Yeasts and Filamentous Fungi PYFF3. Espoo: VTT Technical Research Centre of Finland, p. 14 T3. (VTT Symposium; No. 245).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Conserved synteny in Trichoderma reesei with related filamentous ascomycetes

Martinez, D., Saloheimo, M., Berka, R., Henrissat, B. & Nelson, M. A., 2007, 3rd European Federation of Biotechnology Conference: Physiology of Yeasts and Filamentous Fungi PYFF3. Espoo: VTT Technical Research Centre of Finland, p. 55 P4. (VTT Symposium; No. 245).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Development of Trichoderma reesei transformation technology with the aid of an episomal vector system

Aro, N., Westerholm-Parvinen, A., Penttilä, M. & Saloheimo, M., 2007, 3rd European Federation of Biotechnology Conference: Physiology of Yeasts and Filamentous Fungi PYFF3. Espoo: VTT Technical Research Centre of Finland, p. 149 P93. (VTT Symposium; No. 245).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Heterologous expression of isotypically labelled Trichoderma reesei tyrosinase 2 in Pichia pastoris

Westerholm-Parvinen, A., Mattinen, M., Selinheimo, E. & Markku, S., 2007, 3rd European Federation of Biotechnology Conference: Physiology of Yeasts and Filamentous Fungi PYFF3. Espoo: VTT Technical Research Centre of Finland, p. 136 P80. (VTT Symposium; No. 245).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Spatially segregated snare protein interactions in filamentous fungus Trichoderma reesei

Valkonen, M., Saloheimo, M., Penttilä, M., Read, N. D. & Duncan, R. R., 2007, 3rd European Federation of Biotechnology Conference: Physiology of Yeasts and Filamentous Fungi PYFF3 . Espoo: VTT Technical Research Centre of Finland, p. 132 P76. (VTT Symposium; No. 245).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2008

Expression and characterisation of an Aspergillus oryzae catechol oxidase not carrying a C-terminally processed domain

Faccio, G., Gasparetti, C., Buchert, J., Kruus, K. & Saloheimo, M., 2008, 4th European Meeting on Oxizymes: Abstract book. VTT Technical Research Centre of Finland, p. 61-61 P3.2

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2011

Correlation of gene expression and protein production rate: A system wide study

Arvas, M., Pakula, T., Smit, B., Rautio, J., Jouhten, P., Koivistoinen, H., Lindfors, E., Wiebe, M., Penttilä, M. & Saloheimo, M., 2011, 26th Fungal Genetics Conference at Asilomar March 15-20, 2011. Genetics Society of America, p. 120 (Fungal Genetics Reports; No. Supplement, Vol. 58).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Hydrophobin fusions for high level intracellular protein production and purification in plants and filamentous fungi

Joensuu, J., Conley, A., Mustalahti, E., Lienemann, M., Linder, M., Menassa, R. & Saloheimo, M., 2011, Conference on Recombinant Protein Production 6: Abstracts.

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Protein production in the filamentous fungus Trichoderma reesei in intracellular protein bodies with the help of hydrophobin fusions

Mustalahti, E., Joensuu, J. & Saloheimo, M., 2011, Conference on Recombinant Protein Production 6: Abstracts.

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Transcriptional analysis of Trichoderma reesei cultivated in the presence of different lignocellulose substrate

Häkkinen, M., Saloheimo, M., Penttilä, M. & Pakula, T., 2011, 26th Fungal Genetics Conference at Asilomar March 15-20, 2011. Genetics Society of America, p. 272 645. (Fungal Genetics Reports; No. Supplement, Vol. 58).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Transcriptional and genomic profiling of industrial Trichoderma reesei strains

Mäkinen, S., Paloheimo, M., Pakula, T., Arvas, M., Oja, M., Saloheimo, M., Penttilä, M., Kallio, J., Vehmaanperä, J. & Puranen, T., 2011, Fungal Genetics Conference: 26th Fungal Genetics Conference at Asilomar. New Prairie Press, p. 272 643. (Fungal Genetics Reports; No. 2, Vol. 58).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access
2012

Correlation of gene expression and protein production rate: A system wide study

Arvas, M., Pakula, T., Smit, B., Rautio, J., Koivistoinen, H., Jouhten, P., Lindfors, E., Wiebe, M., Penttilä, M. & Saloheimo, M., 2012, Abstracts from the 11th European Conference on Fungal Genetics. New Prairie Press, p. 244 PR8.52. (Fungal Genetics Reports; No. 6, Vol. 59).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access

Hydrophobin fusions for high level intracellular protein production and purification in Trichoderma reesei

Mustalahti, E., Aro, N., Vitikainen, M., Saloheimo, M. & Joensuu, J., 2012, Abstracts from the 11th European Conference on Fungal Genetics. New Prairie Press, p. 223 PR8.9. (Fungal Genetics Reports; No. 6, Vol. 59).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Transcriptional analysis of Trichoderma reesei cultivated in the presence of different lignocellulose substrates

Häkkinen, M., Arvas, M., Oja, M., Aro, N., Penttilä, M., Saloheimo, M. & Pakula, T., 2012, Abstracts from the 11th European Conference on Fungal Genetics. New Prairie Press, p. 237 PR8.37. (Fungal Genetics Reports; No. 6, Vol. 59).

Research output: Chapter in Book/Report/Conference proceedingConference abstract in proceedingsScientific

Open Access