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Tiina Pakula

19962016
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Trichoderma reesei Agriculture & Biology
Trichoderma Medicine & Life Sciences
unfolded protein response Agriculture & Biology
proteins Agriculture & Biology
fungi Agriculture & Biology
Cellulase Medicine & Life Sciences
Fungi Medicine & Life Sciences
Genes Medicine & Life Sciences

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Research Output 1996 2016

4 Citations

Genome wide analysis of protein production load in Trichoderma reesei

Pakula, T., Nygrén, H., Barth, D., Heinonen, M., Castillo, S. D., Penttilä, M. E. & Arvas, M., 2016, In : Biotechnology for Biofuels. 9, 26 p.

Research output: Contribution to journal › Article › Research › peer-review

Open Access
Trichoderma
genome
Genes
Genome
Proteins
2 Citations

Machine learning of protein interactions in fungal secretory pathways

Kludas, J., Arvas, M., Castillo, S., Pakula, T., Oja, M., Brouard, C., Jäntti, J., Penttilä, M. & Rousu, J., 1 Jul 2016, In : PLoS ONE. 11, 7, e0159302.

Research output: Contribution to journal › Article › Research › peer-review

Open Access
artificial intelligence
Secretory Pathway
Learning systems
seeds
Proteins
6 Citations

Quantitative site-specific phosphoproteomics of Trichoderma reesei signaling pathways upon induction of hydrolytic enzyme production

Nguyen, E. V., Imanishi, S. Y., Haapaniemi, P., Yadav, A., Saloheimo, M., Corthals, G. L. & Pakula, T. M., 2016, In : Journal of Proteome Research. 15, 2, p. 457-467

Research output: Contribution to journal › Article › Research › peer-review

Phosphorylation
Enzyme Induction
Trichoderma
Carbon
Cellulases
1 Citations

Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

Castillo, S., Barth, D., Arvas, M., Pakula, T. M., Pitkänen, E., Blomberg, P., Seppänen-Laakso, T., Nygren, H., Sivasiddarthan, D., Penttilä, M. & Oja, M., 2016, In : Biotechnology for Biofuels. 9, 252, 20 p.

Research output: Contribution to journal › Article › Research › peer-review

Open Access
16 Citations

The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei

Häkkinen, M., Sivasiddarthan, D., Aro, N., Saloheimo, M. & Pakula, T. M., 2015, In : Microbial Cell Factories. 14, 63.

Research output: Contribution to journal › Article › Research › peer-review

Open Access
Trichoderma
Transcriptome
Gene encoding
Genes
Enzymes

Datasets

Genome wide analysis of protein production load in Trichoderma reesei

Pakula, T. (Contributor), Figshare, 28 Jun 2016

DOI: 10.6084/m9.figshare.c.3603251.v1

Dataset