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Tiina Pakula

19962016
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Trichoderma reesei Agriculture & Biology
Trichoderma Medicine & Life Sciences
unfolded protein response Agriculture & Biology
proteins Agriculture & Biology
fungi Agriculture & Biology
Cellulase Medicine & Life Sciences
Fungi Medicine & Life Sciences
Genes Medicine & Life Sciences

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Research Output 1996 2016

6 Citations (Scopus)

Genome wide analysis of protein production load in Trichoderma reesei

Pakula, T., Nygrén, H., Barth, D., Heinonen, M., Castillo, S. D., Penttilä, M. E. & Arvas, M., 2016, In : Biotechnology for Biofuels. 9, 26 p.

Research output: Contribution to journal › Article › Research › peer-review

Open Access
Trichoderma
genome
Genes
Genome
Proteins
3 Citations (Scopus)

Machine learning of protein interactions in fungal secretory pathways

Kludas, J., Arvas, M., Castillo, S., Pakula, T., Oja, M., Brouard, C., Jäntti, J., Penttilä, M. & Rousu, J., 1 Jul 2016, In : PLoS ONE. 11, 7, e0159302.

Research output: Contribution to journal › Article › Research › peer-review

Open Access
artificial intelligence
Secretory Pathway
Learning systems
seeds
Proteins
7 Citations (Scopus)

Quantitative site-specific phosphoproteomics of Trichoderma reesei signaling pathways upon induction of hydrolytic enzyme production

Nguyen, E. V., Imanishi, S. Y., Haapaniemi, P., Yadav, A., Saloheimo, M., Corthals, G. L. & Pakula, T. M., 2016, In : Journal of Proteome Research. 15, 2, p. 457-467

Research output: Contribution to journal › Article › Research › peer-review

Phosphorylation
Enzyme Induction
Trichoderma
Carbon
Cellulases
2 Citations (Scopus)

Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

Castillo, S., Barth, D., Arvas, M., Pakula, T. M., Pitkänen, E., Blomberg, P., Seppänen-Laakso, T., Nygren, H., Sivasiddarthan, D., Penttilä, M. & Oja, M., 2016, In : Biotechnology for Biofuels. 9, 252, 20 p.

Research output: Contribution to journal › Article › Research › peer-review

Open Access
17 Citations (Scopus)

The effects of extracellular pH and of the transcriptional regulator PACI on the transcriptome of Trichoderma reesei

Häkkinen, M., Sivasiddarthan, D., Aro, N., Saloheimo, M. & Pakula, T. M., 2015, In : Microbial Cell Factories. 14, 63.

Research output: Contribution to journal › Article › Research › peer-review

Open Access
Trichoderma
Transcriptome
Gene encoding
Genes
Enzymes

Datasets

Genome wide analysis of protein production load in Trichoderma reesei

Pakula, T. (Contributor), Figshare, 28 Jun 2016

DOI: 10.6084/m9.figshare.c.3603251.v1

Dataset