- 1 - 50 out of 123 results
- Publication Year, Title (descending)
A High-Throughput Workflow for CRISPR/Cas9 Mediated Combinatorial Promoter Replacements and Phenotype Characterization in Yeast
Kuivanen, J., Holmström, S., Lehtinen, B., Penttilä, M. & Jäntti, J., 1 Sep 2018, In : Biotechnology Journal. 13, 9, 1700593.Research output: Contribution to journal › Article › Scientific › peer-review
A universal gene expression system for fungi
Rantasalo, A., Landowski, C. P., Kuivanen, J., Korppoo, A., Reuter, L., Koivistoinen, O., Valkonen, M., Penttilä, M., Jäntti, J. & Mojzita, D., 1 Jan 2018, In : Nucleic Acids Research. 46, 18, 15 p., e111.Research output: Contribution to journal › Article › Scientific › peer-review
Coacervation of resilin fusion proteins containing terminal functionalities
Fang, W., Nonappa, Vitikainen, M., Mohammadi, P., Koskela, S., Soikkeli, M., Westerholm-Parvinen, A., Landowski, C. P., Penttilä, M., Linder, M. B. & Laaksonen, P., 1 Nov 2018, In : Colloids and Surfaces B: Biointerfaces. 171, p. 590-596 7 p.Research output: Contribution to journal › Article › Scientific › peer-review
Enhanced triacylglycerol production with genetically modified Trichosporon oleaginosus
Koivuranta, K., Castillo, S., Jouhten, P., Ruohonen, L., Penttilä, M. & Wiebe, M. G., 21 Jun 2018, In : Frontiers in Microbiology. 9, JUN, 1337.Research output: Contribution to journal › Article › Scientific › peer-review
Phase transitions as intermediate steps in the formation of molecularly engineered protein fibers
Mohammadi, P., Aranko, A. S., Lemetti, L., Cenev, Z., Zhou, Q., Virtanen, S., Landowski, C. P., Penttilä, M., Fischer, W. J., Wagermaier, W. & Linder, M. B., 2018, In : Communications biology. 1, 12 p., 86.Research output: Contribution to journal › Article › Scientific › peer-review
Synthetic Toolkit for Complex Genetic Circuit Engineering in Saccharomyces cerevisiae
Rantasalo, A., Kuivanen, J., Penttilä, M., Jäntti, J. & Mojzita, D., 15 Jun 2018, In : ACS Synthetic Biology. 7, 6, p. 1573-1587 15 p.Research output: Contribution to journal › Article › Scientific › peer-review
Towards patterned bioelectronics: facilitated immobilization of exoelectrogenic Escherichia coli with heterologous pili
Lienemann, M., TerAvest, M. A., Pitkänen, J. P., Stuns, I., Penttilä, M., Ajo-Franklin, C. M. & Jäntti, J., 1 Nov 2018, In : Microbial Biotechnology. 11, 6, p. 1184-1194 11 p.Research output: Contribution to journal › Article › Scientific › peer-review
A design-build-test cycle using modeling and experiments reveals interdependencies between upper glycolysis and xylose uptake in recombinant S. cerevisiae and improves predictive capabilities of large-scale kinetic models
Miskovic, L., Alff-Tuomala, S., Soh, K. C., Barth, D., Salusjärvi, L., Pitkänen, J-P., Ruohonen, L., Penttilä, M. & Hatzimanikatis, V., 2017, In : Biotechnology for Biofuels. 10, 1, 166.Research output: Contribution to journal › Article › Scientific › peer-review
Elastic and pH responsive hybrid interfaces created with engineered resilin and nanocellulose
Fang, W., Paananen, A., Vitikainen, M., Koskela, S., Westerholm-Parvinen, A., Joensuu, J., Landowski, C., Penttilä, M., Linder, M. B. & Laaksonen, P., 12 Jun 2017, In : Biomacromolecules. 18, 6, p. 1866-1873 8 p.Research output: Contribution to journal › Article › Scientific › peer-review
Production of ethylene glycol or glycolic acid from D-xylose in Saccharomyces cerevisiae
Salusjärvi, L., Toivari, M., Vehkomäki, M-L., Koivistoinen, O., Mojzita, D., Niemelä, K., Penttilä, M. & Ruohonen, L., 1 Nov 2017, In : Applied Microbiology and Biotechnology. 101, 22, p. 8151-8163 13 p.Research output: Contribution to journal › Article › Scientific › peer-review
Single-Molecule Force Spectroscopy Study on Modular Resilin Fusion Protein
Griffo, A., Hähl, H., Grandthyll, S., Müller, F., Paananen, A., Ilmén, M., Szilvay, G., Landowski, C. P., Penttilä, M., Jacobs, K. & Laaksonen, P., 1 Jan 2017, In : ACS Omega. 2, 10, p. 6906-6915 10 p.Research output: Contribution to journal › Article › Scientific › peer-review
Synteettinen biologia kestävän biotalouden mahdollistajana: Tiekartta Suomelle
Penttilä, M., 2017, Espoo: VTT Technical Research Centre of Finland. 36 p.Research output: Book/Report › Report
Synthetic biology as an enabler of sustainable bioeconomy: A roadmap for Finland
Penttilä, M., 2017, Espoo: VTT Technical Research Centre of Finland. 36 p.Research output: Book/Report › Report
The Crystal Structure of a Bacterial l -Arabinonate Dehydratase Contains a [2Fe-2S] Cluster
Rahman, M., Andberg, M., Thangaraj, S., Parkkinen, T., Penttilä, M., Jänis, J., Koivula, A., Rouvinen, J. & Hakulinen, N., 21 Jul 2017, In : ACS Chemical Biology. 12, 7, p. 1919-1927 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
Yeast as a tool to express sugar acid transporters with biotechnological interest
Ribas, D., Sá-Pessoa, J., Soares-Silva, I., Paiva, S., Nygård, Y., Ruohonen, L., Penttilä, M. & Casal, M., 1 Mar 2017, In : FEMS Yeast Research. 17, 2, fox005.Research output: Contribution to journal › Article › Scientific › peer-review
Characterization and mutagenesis of two novel iron-sulphur cluster pentonate dehydratases
Andberg, M., Aro-Kärkkäinen, N., Carlson, P., Oja, M., Bozonnet, S., Toivari, M., Hakulinen, N., O'Donohue, M., Penttilä, M. & Koivula, A., 2016, In : Applied Microbiology and Biotechnology. 100, 17, p. 7549-7563Research output: Contribution to journal › Article › Scientific › peer-review
Characterization of a unique Caulobacter crescentus aldose-aldose oxidoreductase having dual activities
Andberg, M., Maaheimo, H., Kumpula, E-P., Boer, H., Toivari, M., Penttilä, M. & Koivula, A., 2016, In : Applied Microbiology and Biotechnology. 100, 2, p. 673-685Research output: Contribution to journal › Article › Scientific › peer-review
Genome wide analysis of protein production load in Trichoderma reesei
Pakula, T., Nygrén, H., Barth, D., Heinonen, M., Castillo, S. D., Penttilä, M. E. & Arvas, M., 2016, In : Biotechnology for Biofuels. 9, 26 p.Research output: Contribution to journal › Article › Scientific › peer-review
Machine learning of protein interactions in fungal secretory pathways
Kludas, J., Arvas, M., Castillo, S., Pakula, T., Oja, M., Brouard, C., Jäntti, J., Penttilä, M. & Rousu, J., 1 Jul 2016, In : PLoS ONE. 11, 7, e0159302.Research output: Contribution to journal › Article › Scientific › peer-review
Production and applications of carbohydrate-derived sugar acids as generic biobased chemicals
Mehtiö, T., Toivari, M., Wiebe, M. G., Harlin, A., Penttilä, M. & Koivula, A., 2016, In : Critical Reviews in Biotechnology. 36, 5, p. 904-916Research output: Contribution to journal › Article › Scientific › peer-review
Synthetic transcription amplifier system for orthogonal control of gene expression in saccharomyces cerevisiae
Rantasalo, A., Czeizler, E., Virtanen, R., Rousu, J., Lähdesmäki, H., Penttilä, M., Jäntti, J. & Mojzita, D., 2016, In : PLoS ONE. 11, 2, e0148320.Research output: Contribution to journal › Article › Scientific › peer-review
Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction
Castillo, S., Barth, D., Arvas, M., Pakula, T. M., Pitkänen, E., Blomberg, P., Seppänen-Laakso, T., Nygren, H., Sivasiddarthan, D., Penttilä, M. & Oja, M., 2016, In : Biotechnology for Biofuels. 9, 252, 20 p.Research output: Contribution to journal › Article › Scientific › peer-review
Xylose-induced dynamic effects on metabolism and gene expression in engineered Saccharomyces cerevisiae in anaerobic glucose-xylose cultures
Alff-Tuomala, S., Salusjärvi, L., Barth, D., Oja, M., Penttilä, M. E., Pitkänen, J. P., Ruohonen, L. & Jouhten, P., 2016, In : Applied Microbiology and Biotechnology. 100, 2, p. 969-985Research output: Contribution to journal › Article › Scientific › peer-review
A novel aldose-aldose oxidoreductase for co-production of D-xylonate and xylitol from D-xylose with Saccharomyces cerevisiae
Wiebe, M. G., Nygård, Y., Oja, M., Andberg, M., Ruohonen, L., Koivula, A., Penttilä, M. & Toivari, M., 2015, In : Applied Microbiology and Biotechnology. 99, 22, p. 9439-9447Research output: Contribution to journal › Article › Scientific › peer-review
Capillary electrophoresis with laser-induced fluorescence detection for studying amino acid uptake by yeast during beer fermentation
Turkia, H., Sirén, H., Penttilä, M. & Pitkänen, J-P., 2015, In : Talanta. 131, p. 366-371Research output: Contribution to journal › Article › Scientific › peer-review
Enabling low cost biopharmaceuticals: A systematic approach to delete proteases from a well-known protein production host trichoderma reesei
Landowski, C. P., Huuskonen, A., Wahl, R., Westerholm-Parvinen, A., Kanerva, A., Hänninen, A-L., Salovuori, N., Penttilä, M., Natunen, J., Ostermeier, C., Helk, B., Saarinen, J. & Saloheimo, M., 2015, In : PLoS ONE. 10, 8, e0134723.Research output: Contribution to journal › Article › Scientific › peer-review
Metabolic engineering of the fungal D-galacturonate pathway for L-ascorbic acid production
Kuivanen, J., Richard, P. & Penttilä, M., 2015, In : Microbial Cell Factories. 14, 9 p., 2.Research output: Contribution to journal › Article › Scientific › peer-review
Overexpression of PAD1 and FDC1 results in significant cinnamic acid decarboxylase activity in Saccharomyces cerevisiae
Richard, P., Viljanen, K. & Penttilä, M., 2015, In : AMB Express. 5, 12, 5 p.Research output: Contribution to journal › Article › Scientific › peer-review
Removing boundaries for therapeutic protein production in the filamentous fungus Trichoderma reesei: Reduction of the host protease load
Landowski, C., Huuskonen, A., Wahl, R., Westerholm-Parvinen, A., Sommer, B., Penttilä, M., Natunen, J., Ostermeier, C., Helk, B., Saarinen, J. & Saloheimo, M., 2015.Research output: Contribution to conference › Conference Abstract › Scientific
Structure and function of Caulobacter crescentus aldose-aldose oxidoreductase
Taberman, H., Andberg, M., Koivula, A., Hakulinen, N., Penttilä, M., Rouvinen, J. & Parkkinen, T., 2015, In : Biochemical Journal. 472, 3, p. 297-307Research output: Contribution to journal › Article › Scientific › peer-review
Swollenin from Trichoderma reesei exhibits hydrolytic activity against cellulosic substrates with features of both endoglucanases and cellobiohydrolases
Andberg, M., Penttilä, M. & Saloheimo, M., 2015, In : Bioresource Technology. 181, p. 105-113Research output: Contribution to journal › Article › Scientific › peer-review
The use of carbohydrate binding modules (CBMs) to monitor changes in fragmentation and cellulose fiber surface morphology during cellulase- and Swollenin-induced deconstruction of lignocellulosic substrates
Gourlay, K., Hu, J., Arantes, V., Penttilä, M. & Saddler, J. N., 2015, In : Journal of Biological Chemistry. 290, p. 2938-2945Research output: Contribution to journal › Article › Scientific › peer-review
Anaerobic carbon metabolism of saccharomyces cerevisiae
Jouhten, P. & Penttilä, M., 1 Apr 2014, Molecular Mechanisms in Yeast Carbon Metabolism. Springer, p. 57-82 26 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter or book article › Professional
Categorisation of sugar acid dehydratases in Aspergillus niger
Motter, F. A., Kuivanen, J., Keränen, H., Hilditch, S., Penttilä, M. & Richard, P., 1 Mar 2014, In : Fungal Genetics and Biology. 64, p. 67-72 6 p.Research output: Contribution to journal › Article › Scientific › peer-review
Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species
Pitkänen, E., Jouhten, P., Hou, J., Syed, M. F., Blomberg, P., Kludas, J., Oja, M., Holm, L., Penttilä, M., Rousu, J. & Arvas, M., 1 Jan 2014, In : PLoS Computational Biology. 10, 2, e1003465.Research output: Contribution to journal › Article › Scientific › peer-review
Engineering chimeric thermostable GH7 cellobiohydrolases in Saccharomyces cerevisiae
Voutilainen, S. P., Nurmi-Rantala, S., Penttilä, M. & Koivula, A., 1 Jan 2014, In : Applied Microbiology and Biotechnology. 98, 7, p. 2991-3001Research output: Contribution to journal › Article › Scientific › peer-review
Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae
Lindfors, E., Jouhten, P., Oja, M., Rintala, E., Orešič, M. & Penttilä, M., 14 Feb 2014, In : BMC Systems Biology. 8, 1, 16.Research output: Contribution to journal › Article › Scientific › peer-review
Intracellular pH responses in the industrially important fungus Trichoderma reesei
Valkonen, M., Penttilä, M. & Benčina, M., 1 Jan 2014, In : Fungal Genetics and Biology. 70, p. 86-93Research output: Contribution to journal › Article › Scientific › peer-review
Investigation of protein secretion and secretion stress in Ashbya gossypii
Aguiar, T. Q., Ribeiro, O., Arvas, M., Wiebe, M. G., Penttilä, M. & Domingues, L., 18 Dec 2014, In : BMC Genomics. 15, 1, 1137.Research output: Contribution to journal › Article › Scientific › peer-review
l-Arabinose/d-galactose 1-dehydrogenase of Rhizobium leguminosarum bv. trifolii characterised and applied for bioconversion of l-arabinose to l-arabonate with Saccharomyces cerevisiae
Aro-Kärkkäinen, N., Toivari, M., Maaheimo, H., Ylilauri, M., Pentikäinen, O. T., Andberg, M., Oja, M., Penttilä, M., Wiebe, M. G., Ruohonen, L. & Koivula, A., 1 Jan 2014, In : Applied Microbiology and Biotechnology. 98, 23, p. 9653-9665 13 p.Research output: Contribution to journal › Article › Scientific › peer-review
L-lactic acid production from D-xylose with Candida sonorensis expressing a heterologous lactate dehydrogenase encoding gene
Koivuranta, K., Ilmen, M., Wiebe, M., Ruohonen, L., Suominen, P. & Penttilä, M., 2014, In : Microbial Cell Factories. 13, 107.Research output: Contribution to journal › Article › Scientific › peer-review
Molecular and functional characterization of an invertase secreted by Ashbya gossypii
Aguiar, T. Q., Dinis, C., Magalhães, F., Oliveira, C., Wiebe, M. G., Penttilä, M. & Domingues, L., 1 Jan 2014, In : Molecular Biotechnology. 56, 6, p. 524-534 11 p.Research output: Contribution to journal › Article › Scientific › peer-review
Screening of candidate regulators for cellulase and hemicellulase production in Trichoderma reesei and identification of a factor essential for cellulase production
Häkkinen, M., Valkonen, M. J., Westerholm-Parvinen, A., Aro, N., Arvas, M., Vitikainen, M., Penttilä, M., Saloheimo, M. & Pakula, T. M., 28 Jan 2014, In : Biotechnology for Biofuels. 7, 1, 14.Research output: Contribution to journal › Article › Scientific › peer-review
Single cell and in vivo analyses elucidate the effect of xylC lactonase during production of D-xylonate in Saccharomyces cerevisiae
Nygård, Y., Maaheimo, H., Mojzita, D., Toivari, M., Wiebe, M., Resnekov, O., Gustavo Pesce, C., Ruohonen, L. & Penttilä, M., 1 Jan 2014, In : Metabolic Engineering. 25, p. 238-247Research output: Contribution to journal › Article › Scientific › peer-review
Structure and function of a decarboxylating Agrobacterium tumefaciens Keto-deoxy-D-galactarate dehydratase
Taberman, H., Andberg, M., Parkkinen, T., Jänis, J., Penttilä, M., Hakulinen, N., Koivula, A. & Rouvinen, J., 30 Dec 2014, In : Biochemistry. 53, 51, p. 8052-8060 9 p.Research output: Contribution to journal › Article › Scientific › peer-review
The diverse role of Pdr12 in resistance to weak organic acids
Nygård, Y., Mojzita, D., Toivari, M., Penttilä, M., Wiebe, M. G. & Ruohonen, L., 1 Jan 2014, In : Yeast. 31, 6, p. 219-232 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
The industrial potential of bio-based glycolic acid and polyglycolic acid: Short survey
Gädda, T. M., Pirttimaa, M. M., Koivistoinen, O., Richard, P., Penttilä, M. & Harlin, A., 1 Jan 2014, In : Appita Journal. 67, 1, 1 p.Research output: Contribution to journal › Review Article › Scientific › peer-review
The role of CRE1 in nucleosome positioning within the cbh1 promoter and coding regions of Trichoderma reesei
Ries, L., Belshaw, N. J., Ilmén, M., Penttilä, M. E., Alapuranen, M. & Archer, D. B., 1 Jan 2014, In : Applied Microbiology and Biotechnology. 98, 2, p. 749-762 14 p.Research output: Contribution to journal › Article › Scientific › peer-review
Transcriptome of Saccharomyces cerevisiae during production of D-xylonate
Mojzita, D., Oja, M., Rintala, E., Wiebe, M., Penttilä, M. & Ruohonen, L., 5 Sep 2014, In : BMC Genomics. 15, 1, 763.Research output: Contribution to journal › Article › Scientific › peer-review
Capillary electrophoresis for the monitoring of phenolic compounds in bioprocesses
Turkia, H., Sirén, H., Penttilä, M. & Pitkänen, J. P., 22 Feb 2013, In : Journal of Chromatography A. 1278, p. 175-180Research output: Contribution to journal › Article › Scientific › peer-review