Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators

Sanna Auer (Corresponding Author), Martin Nirschl, Matthias Schreiter, Inger Vikholm-Lundin

Research output: Contribution to journalArticleScientificpeer-review

16 Citations (Scopus)

Abstract

Nanomolar quantities of single-stranded DNA products ∼100 nucleotides long can be detected in diluted 1% serum by surface plasmon resonance (SPR) and film bulk acoustic resonators (FBARs). We have used a novel FBAR sensor in parallel with SPR and obtained promising results with both the acoustic and the optical device. Oligonucleotides and a repellent lipoamide, Lipa-DEA, were allowed to assemble on the sensor chip surfaces for only 15 min by dispensing. Lipa-DEA surrounds the analyte-binding probes on the surface and effectively reduces the non-specific binding of bovine serum albumin and non-complementary strands. In a highly diluted serum matrix, the non-specific binding is, however, a hindrance, and the background response must be reduced. Nanomolar concentrations of short complementary oligos could be detected in buffer, whereas the response was too low to be measured in serum. DNA strands that are approximately 100 base pairs long at concentrations as low as 1-nM could be detected both in buffer and in 1% serum by both SPR and the FBAR resonator.
Original languageEnglish
Pages (from-to)1387-1396
JournalAnalytical and Bioanalytical Chemistry
Volume400
Issue number5
DOIs
Publication statusPublished - 2011
MoE publication typeA1 Journal article-refereed

Fingerprint

Acoustic resonators
Surface Plasmon Resonance
Surface plasmon resonance
Acoustics
DNA
Buffers
Serum
Single-Stranded DNA
Sensors
Bovine Serum Albumin
Optical devices
Oligonucleotides
Optical Devices
Resonators
Nucleotides
Base Pairing

Keywords

  • Surface plasmon resonance
  • Film bulk acoustic resonator
  • DNA hybridisation detection
  • Serum
  • Self-assembled monolayer
  • DNA sensor

Cite this

Auer, Sanna ; Nirschl, Martin ; Schreiter, Matthias ; Vikholm-Lundin, Inger. / Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators. In: Analytical and Bioanalytical Chemistry. 2011 ; Vol. 400, No. 5. pp. 1387-1396.
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abstract = "Nanomolar quantities of single-stranded DNA products ∼100 nucleotides long can be detected in diluted 1{\%} serum by surface plasmon resonance (SPR) and film bulk acoustic resonators (FBARs). We have used a novel FBAR sensor in parallel with SPR and obtained promising results with both the acoustic and the optical device. Oligonucleotides and a repellent lipoamide, Lipa-DEA, were allowed to assemble on the sensor chip surfaces for only 15 min by dispensing. Lipa-DEA surrounds the analyte-binding probes on the surface and effectively reduces the non-specific binding of bovine serum albumin and non-complementary strands. In a highly diluted serum matrix, the non-specific binding is, however, a hindrance, and the background response must be reduced. Nanomolar concentrations of short complementary oligos could be detected in buffer, whereas the response was too low to be measured in serum. DNA strands that are approximately 100 base pairs long at concentrations as low as 1-nM could be detected both in buffer and in 1{\%} serum by both SPR and the FBAR resonator.",
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Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators. / Auer, Sanna (Corresponding Author); Nirschl, Martin; Schreiter, Matthias; Vikholm-Lundin, Inger.

In: Analytical and Bioanalytical Chemistry, Vol. 400, No. 5, 2011, p. 1387-1396.

Research output: Contribution to journalArticleScientificpeer-review

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T1 - Detection of DNA hybridisation in a diluted serum matrix by surface plasmon resonance and film bulk acoustic resonators

AU - Auer, Sanna

AU - Nirschl, Martin

AU - Schreiter, Matthias

AU - Vikholm-Lundin, Inger

PY - 2011

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AB - Nanomolar quantities of single-stranded DNA products ∼100 nucleotides long can be detected in diluted 1% serum by surface plasmon resonance (SPR) and film bulk acoustic resonators (FBARs). We have used a novel FBAR sensor in parallel with SPR and obtained promising results with both the acoustic and the optical device. Oligonucleotides and a repellent lipoamide, Lipa-DEA, were allowed to assemble on the sensor chip surfaces for only 15 min by dispensing. Lipa-DEA surrounds the analyte-binding probes on the surface and effectively reduces the non-specific binding of bovine serum albumin and non-complementary strands. In a highly diluted serum matrix, the non-specific binding is, however, a hindrance, and the background response must be reduced. Nanomolar concentrations of short complementary oligos could be detected in buffer, whereas the response was too low to be measured in serum. DNA strands that are approximately 100 base pairs long at concentrations as low as 1-nM could be detected both in buffer and in 1% serum by both SPR and the FBAR resonator.

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KW - Film bulk acoustic resonator

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KW - Self-assembled monolayer

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DO - 10.1007/s00216-011-4871-0

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