Evaluation of ITS PCR and RFLP for differentiation and identification of brewing yeast and brewery 'wild' yeast contaminants

T. Pham, T. Wimalasena, W.G. Box, Kari Koivuranta, Erna Storgårds, K.A. Smart, Brian Gibson (Corresponding Author)

Research output: Contribution to journalArticleScientificpeer-review

31 Citations (Scopus)

Abstract

A reference library of ITS PCR/RFLP profiles was collated and augmented to evaluate its potential for routine identification of domestic brewing yeast and known ‘wild’ yeast contaminants associated with wort, beer and brewing processes. This library contains information on band sizes generated by restriction digestion of the ribosomal RNA‐encoding DNA (rDNA) internal transcribed spacer (ITS) region consisting of the 5.8 rRNA gene and two flanking regions (ITS1 and ITS2) with the endonucleases CfoI, HaeIII, HinfI and includes strains from 39 non‐Saccharomyces yeast species as well as for brewing and non‐brewing strains of Saccharomyces. The efficacy of the technique was assessed by isolation of 59 wild yeasts from industrial fermentation vessels and conditioning tanks and by matching their ITS amplicon sizes and RFLP profiles with those of the constructed library. Five separate, non‐introduced yeast taxa were putatively identified. These included Pichia species, which were associated with conditioning tanks and Saccharomyces species isolated from fermentation vessels. Strains of the lager yeast S. pastorianus could be reliably identified as belonging to either the Saaz or Frohberg hybrid group by restriction digestion of the ITS amplicon with the enzyme HaeIII. Frohberg group strains could be further sub‐grouped depending on restriction profiles generated with HinfI.
Original languageEnglish
Pages (from-to)556-568
JournalJournal of the Institute of Brewing
Volume117
Issue number4
DOIs
Publication statusPublished - 2011
MoE publication typeA1 Journal article-refereed

Fingerprint

brewing industry
brewing
Restriction Fragment Length Polymorphisms
internal transcribed spacers
restriction fragment length polymorphism
Yeasts
yeasts
Polymerase Chain Reaction
Libraries
Saccharomyces
Fermentation
digestion
fermentation
Digestion
brewers yeast
Pichia
wort (brewing)
beers
ribosomal DNA
Ribosomal DNA

Keywords

  • brewery
  • contaminant
  • identification
  • ITS
  • rDNA
  • RFLP
  • yeast

Cite this

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title = "Evaluation of ITS PCR and RFLP for differentiation and identification of brewing yeast and brewery 'wild' yeast contaminants",
abstract = "A reference library of ITS PCR/RFLP profiles was collated and augmented to evaluate its potential for routine identification of domestic brewing yeast and known ‘wild’ yeast contaminants associated with wort, beer and brewing processes. This library contains information on band sizes generated by restriction digestion of the ribosomal RNA‐encoding DNA (rDNA) internal transcribed spacer (ITS) region consisting of the 5.8 rRNA gene and two flanking regions (ITS1 and ITS2) with the endonucleases CfoI, HaeIII, HinfI and includes strains from 39 non‐Saccharomyces yeast species as well as for brewing and non‐brewing strains of Saccharomyces. The efficacy of the technique was assessed by isolation of 59 wild yeasts from industrial fermentation vessels and conditioning tanks and by matching their ITS amplicon sizes and RFLP profiles with those of the constructed library. Five separate, non‐introduced yeast taxa were putatively identified. These included Pichia species, which were associated with conditioning tanks and Saccharomyces species isolated from fermentation vessels. Strains of the lager yeast S. pastorianus could be reliably identified as belonging to either the Saaz or Frohberg hybrid group by restriction digestion of the ITS amplicon with the enzyme HaeIII. Frohberg group strains could be further sub‐grouped depending on restriction profiles generated with HinfI.",
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Evaluation of ITS PCR and RFLP for differentiation and identification of brewing yeast and brewery 'wild' yeast contaminants. / Pham, T.; Wimalasena, T.; Box, W.G.; Koivuranta, Kari; Storgårds, Erna; Smart, K.A.; Gibson, Brian (Corresponding Author).

In: Journal of the Institute of Brewing, Vol. 117, No. 4, 2011, p. 556-568.

Research output: Contribution to journalArticleScientificpeer-review

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