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Functional brain segmentation using inter-subject correlation in fMRI

  • Jukka-Pekka Kauppi
  • , Juha Pajula
  • , Jari Niemi
  • , Riitta Hari
  • , Jussi Tohka
    • University of Helsinki
    • University of Jyväskylä
    • Aalto University
    • University of Eastern Finland

    Research output: Contribution to journalArticleScientificpeer-review

    Abstract

    The human brain continuously processes massive amounts of rich sensory information. To better understand such highly complex brain processes, modern neuroimaging studies are increasingly utilizing experimental setups that better mimic daily-life situations. A new exploratory data-analysis approach, functional segmentation inter-subject correlation analysis (FuSeISC), was proposed to facilitate the analysis of functional magnetic resonance (fMRI) data sets collected in these experiments. The method provides a new type of functional segmentation of brain areas, not only characterizing areas that display similar processing across subjects but also areas in which processing across subjects is highly variable. FuSeISC was tested using fMRI data sets collected during traditional block-design stimuli (37 subjects) as well as naturalistic auditory narratives (19 subjects). The method identified spatially local and/or bilaterally symmetric clusters in several cortical areas, many of which are known to be processing the types of stimuli used in the experiments. The method is not only useful for spatial exploration of large fMRI data sets obtained using naturalistic stimuli, but also has other potential applications, such as generation of a functional brain atlases including both lower- and higher-order processing areas. Finally, as a part of FuSeISC, a criterion-based sparsification of the shared nearest-neighbor graph was proposed for detecting clusters in noisy data. In the tests with synthetic data, this technique was superior to well-known clustering methods, such as Ward's method, affinity propagation, and K-means ++. Hum Brain Mapp 38:2643–2665, 2017.

    Original languageEnglish
    Pages (from-to)2643-2665
    Number of pages23
    JournalHuman Brain Mapping
    Volume38
    Issue number5
    DOIs
    Publication statusPublished - 1 May 2017
    MoE publication typeA1 Journal article-refereed

    Funding

    JPK was funded by the Academy of Finland Postdoctoral Researcher program (Research Council for Natural Sciences and Engineering; grant number 286019). RH was funded by the Finnish Cultural Foundation (Eminentia grant). JT received funding from the Universidad Carlos III de Madrid, the European Union's Seventh Framework Programme for research, technological development and demonstration under grant agreement nr 600371, el Ministerio de Econom\u00EDa y Competitividad (COFUND2013-40258) and Banco Santander. Data collection and sharing for this project were provided in part by the International Consortium for Brain Mapping (ICBM; Principal Investigator: John Mazziotta, M.D., Ph.D.). ICBM funding was provided by the National Institute of Biomedical Imaging and BioEngineering. ICBM data are disseminated by the Laboratory of Neuro Imaging at the University of Southern California. The rfMRI data in this study were provided [in part] by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University.

    Keywords

    • functional magnetic resonance imaging
    • functional segmentation
    • gaussian mixture model
    • human brain
    • inter-subject correlation
    • inter-subject variability
    • naturalistic stimulation
    • shared nearest-neighbor graph

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