Heterotrophic communities supplied by ancient organic carbon predominate in deep fennoscandian bedrock fluids

Lotta Purkamo (Corresponding Author), Malin Bomberg, Mari Nyyssönen, I. Kukkonen, L. Ahonen, Merja Itävaara

Research output: Contribution to journalArticleScientificpeer-review

20 Citations (Scopus)

Abstract

The deep subsurface hosts diverse life, but the mech- anisms that sustain this diversity remain elusive. Here, we studied microbial communities involved in carbon cycling in deep, dark biosphere and identified anaerobic microbial energy production mechanisms from groundwater of Fennoscandian crystalline bedrock sampled from a deep drill hole in Outokumpu, Finland, by using molecular biological analyses. Carbon cycling pathways, such as carbon assimilation, meth- ane production and methane consumption, were studied with cbbM, rbcL, acsB, accC, mcrA and pmoA marker genes, respectively. Energy sources, i.e. the terminal electron accepting processes of sulphate-reducing and nitrate-reducing communi- ties, were assessed with detection of marker genes dsrB and narG, respectively. While organic carbon is scarce in deep subsurface, the main carbon source for microbes has been hypothesized to be inorganic carbon dioxide. However, our results demonstrate that carbon assimilation is performed throughout the Outokumpu deep scientific drill hole water column by mainly heterotrophic microorganisms such as Clostridia. The source of carbon for the heterotrophic microbial metabolism is likely the Outokumpu bedrock, mainly com- posed of serpentinites and metasediments with black schist interlayers. In addition to organotrophic metabolism, nitrate and sulphate are other possible energy sources. Methanogenic and methanotrophic microorganisms are scarce, but our analy- ses suggest that the Outokumpu deep biosphere provides niches for these organisms; however, they are not very abundant.
Original languageEnglish
Pages (from-to)319-332
JournalMicrobial Ecology
Volume69
Issue number2
DOIs
Publication statusPublished - 2015
MoE publication typeA1 Journal article-refereed

Fingerprint

bedrock
organic carbon
fluid
carbon
microorganisms
energy
sulfates
biosphere
nitrates
microorganism
metabolism
methane
metamorphic rocks
genetic markers
sulfate
nitrate
methane production
gene
inorganic carbon
Finland

Keywords

  • carbon cycling
  • nitrogen cycling
  • deep subsurface
  • functional microbial communities
  • heterotrophy

Cite this

Purkamo, Lotta ; Bomberg, Malin ; Nyyssönen, Mari ; Kukkonen, I. ; Ahonen, L. ; Itävaara, Merja. / Heterotrophic communities supplied by ancient organic carbon predominate in deep fennoscandian bedrock fluids. In: Microbial Ecology. 2015 ; Vol. 69, No. 2. pp. 319-332.
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Heterotrophic communities supplied by ancient organic carbon predominate in deep fennoscandian bedrock fluids. / Purkamo, Lotta (Corresponding Author); Bomberg, Malin; Nyyssönen, Mari; Kukkonen, I.; Ahonen, L.; Itävaara, Merja.

In: Microbial Ecology, Vol. 69, No. 2, 2015, p. 319-332.

Research output: Contribution to journalArticleScientificpeer-review

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AU - Purkamo, Lotta

AU - Bomberg, Malin

AU - Nyyssönen, Mari

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AU - Ahonen, L.

AU - Itävaara, Merja

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