Structure-based protein engineering efforts with a monomeric TIM variant: The importance of a single point mutation for generating an active site with suitable binding properties

Markus Alahuhta, Mikko Salin, Marco G. Casteleijn, Christian Kemmer, Ibrahim El-Sayed, Koen Augustyns, Peter Neubauer, Rik K. Wierenga

Research output: Contribution to journalArticleScientificpeer-review

12 Citations (Scopus)

Abstract

A monomeric variant of triosephosphate isomerase (TIM) with a new engineered binding groove has been characterized further. In this variant (ml8bTIM), the phosphate binding loop had been shortened, causing the binding site to be much more extended. Here, it is reported that in the V233A variant of ml8bTIM (A-TIM), three important properties of the wild-type TIM active site have been restored: (i) the structural properties of loop-7, (ii) the binding site of a conserved water molecule between loop-7 and loop-8 and (iii) the binding site of the phosphate moiety. It is shown that the active site of A-TIM can bind TIM transition state analogs and suicide inhibitors competently. It is found that the active site geometry of the A-TIM complexes is less compact and more solvent exposed, as in wild-type TIM. This correlates with the observation that the catalytic efficiency of A-TIM for interconverting the TIM substrates is too low to be detected. It is also shown that the A-TIM active site can bind compounds which do not bind to wild-type TIM and which are completely different from the normal TIM substrate, like a citrate molecule. The binding of this citrate molecule is stabilized by hydrogen bonding interactions with the new binding groove.
Original languageEnglish
Pages (from-to)257-266
Number of pages10
JournalProtein Engineering, Design and Selection
Volume21
Issue number4
DOIs
Publication statusPublished - 31 Jan 2008
MoE publication typeA1 Journal article-refereed

Fingerprint

Triose-Phosphate Isomerase
Protein Engineering
Binding sites
Point Mutation
Catalytic Domain
Proteins
Molecules
Phosphates
Substrates
Structural properties
Hydrogen bonds
Geometry
Binding Sites
Citric Acid
Water
Hydrogen Bonding
Suicide

Keywords

  • Citrate
  • Monomeric TIM
  • Protein design
  • Suicide inhibitor
  • Transition state analog

Cite this

Alahuhta, Markus ; Salin, Mikko ; Casteleijn, Marco G. ; Kemmer, Christian ; El-Sayed, Ibrahim ; Augustyns, Koen ; Neubauer, Peter ; Wierenga, Rik K. / Structure-based protein engineering efforts with a monomeric TIM variant : The importance of a single point mutation for generating an active site with suitable binding properties. In: Protein Engineering, Design and Selection. 2008 ; Vol. 21, No. 4. pp. 257-266.
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abstract = "A monomeric variant of triosephosphate isomerase (TIM) with a new engineered binding groove has been characterized further. In this variant (ml8bTIM), the phosphate binding loop had been shortened, causing the binding site to be much more extended. Here, it is reported that in the V233A variant of ml8bTIM (A-TIM), three important properties of the wild-type TIM active site have been restored: (i) the structural properties of loop-7, (ii) the binding site of a conserved water molecule between loop-7 and loop-8 and (iii) the binding site of the phosphate moiety. It is shown that the active site of A-TIM can bind TIM transition state analogs and suicide inhibitors competently. It is found that the active site geometry of the A-TIM complexes is less compact and more solvent exposed, as in wild-type TIM. This correlates with the observation that the catalytic efficiency of A-TIM for interconverting the TIM substrates is too low to be detected. It is also shown that the A-TIM active site can bind compounds which do not bind to wild-type TIM and which are completely different from the normal TIM substrate, like a citrate molecule. The binding of this citrate molecule is stabilized by hydrogen bonding interactions with the new binding groove.",
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Structure-based protein engineering efforts with a monomeric TIM variant : The importance of a single point mutation for generating an active site with suitable binding properties. / Alahuhta, Markus; Salin, Mikko; Casteleijn, Marco G.; Kemmer, Christian; El-Sayed, Ibrahim; Augustyns, Koen; Neubauer, Peter; Wierenga, Rik K.

In: Protein Engineering, Design and Selection, Vol. 21, No. 4, 31.01.2008, p. 257-266.

Research output: Contribution to journalArticleScientificpeer-review

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T1 - Structure-based protein engineering efforts with a monomeric TIM variant

T2 - The importance of a single point mutation for generating an active site with suitable binding properties

AU - Alahuhta, Markus

AU - Salin, Mikko

AU - Casteleijn, Marco G.

AU - Kemmer, Christian

AU - El-Sayed, Ibrahim

AU - Augustyns, Koen

AU - Neubauer, Peter

AU - Wierenga, Rik K.

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