The testosterone binding mechanism of an antibody derived from a naïve human scFv library

Merja Niemi, Kristiina Takkinen, Lotta Amundsen, Hans Söderlund, Juha Rouvinen (Corresponding Author), Matti Höyhtyä

Research output: Contribution to journalArticleScientificpeer-review

7 Citations (Scopus)

Abstract

A testosterone binding scFv antibody was isolated from a naïve human library with a modest size of 108 clones. The crystal structure of the Fab fragment form of the 5F2 antibody clone complexed with testosterone determined at 1.5 Å resolution shows that the hapten is bound deeply in the antibody binding pocket. In addition to the interactions with framework residues only CDR‐L3 and CDR‐H3 loops interact with testosterone and the heavy chain forms the majority of the contacts with the hapten. The testosterone binding site of the 5F2 antibody with a high abundance of aromatic amino acid residues shows similarity with an in vitro affinity matured antibody having around 300 times higher affinity. The moderate affinity of the 5F2 antibody originates from the different orientation of the hapten and few light chain contacts. This is the first three‐dimensional structure of a human steroid hormone binding antibody that has been isolated from a naïve human repertoire.
Original languageEnglish
Pages (from-to)209-219
Number of pages11
JournalJournal of Molecular Recognition
Volume24
Issue number2
DOIs
Publication statusPublished - 2011
MoE publication typeA1 Journal article-refereed

Fingerprint

Libraries
Testosterone
Haptens
Antibody Affinity
Antibodies
Antibody Binding Sites
Single-Chain Antibodies
Aromatic Amino Acids
Immunoglobulin Fab Fragments
Clone Cells
Steroids
Hormones
Light

Keywords

  • antibody library
  • crystal structure
  • fab fragment
  • hapten
  • steroid hormone
  • twinning

Cite this

Niemi, Merja ; Takkinen, Kristiina ; Amundsen, Lotta ; Söderlund, Hans ; Rouvinen, Juha ; Höyhtyä, Matti. / The testosterone binding mechanism of an antibody derived from a naïve human scFv library. In: Journal of Molecular Recognition. 2011 ; Vol. 24, No. 2. pp. 209-219.
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abstract = "A testosterone binding scFv antibody was isolated from a na{\"i}ve human library with a modest size of 108 clones. The crystal structure of the Fab fragment form of the 5F2 antibody clone complexed with testosterone determined at 1.5 {\AA} resolution shows that the hapten is bound deeply in the antibody binding pocket. In addition to the interactions with framework residues only CDR‐L3 and CDR‐H3 loops interact with testosterone and the heavy chain forms the majority of the contacts with the hapten. The testosterone binding site of the 5F2 antibody with a high abundance of aromatic amino acid residues shows similarity with an in vitro affinity matured antibody having around 300 times higher affinity. The moderate affinity of the 5F2 antibody originates from the different orientation of the hapten and few light chain contacts. This is the first three‐dimensional structure of a human steroid hormone binding antibody that has been isolated from a na{\"i}ve human repertoire.",
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The testosterone binding mechanism of an antibody derived from a naïve human scFv library. / Niemi, Merja; Takkinen, Kristiina; Amundsen, Lotta; Söderlund, Hans; Rouvinen, Juha (Corresponding Author); Höyhtyä, Matti.

In: Journal of Molecular Recognition, Vol. 24, No. 2, 2011, p. 209-219.

Research output: Contribution to journalArticleScientificpeer-review

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